Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7LN6
DownloadVisualize
BU of 7ln6 by Molmil
Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (CHAPSO, Class 2, Open State)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Pan, M, Yu, Y, Liu, L, Zhao, M.
Deposit date:2021-02-06
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Mechanistic insight into substrate processing and allosteric inhibition of human p97.
Nat.Struct.Mol.Biol., 28, 2021
7LN5
DownloadVisualize
BU of 7ln5 by Molmil
Cryo-EM structure of human p97 in complex with Npl4/Ufd1 and polyubiquitinated Ub-Eos (CHAPSO, Class 1, Close State)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Pan, M, Yu, Y, Liu, L, Zhao, M.
Deposit date:2021-02-06
Release date:2021-09-15
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Mechanistic insight into substrate processing and allosteric inhibition of human p97.
Nat.Struct.Mol.Biol., 28, 2021
6VHH
DownloadVisualize
BU of 6vhh by Molmil
Human Teneurin-2 and human Latrophilin-3 binary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adhesion G protein-coupled receptor L3, ...
Authors:Xie, Y, Li, J, Arac, D, Zhao, M.
Deposit date:2020-01-09
Release date:2020-06-03
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Alternative splicing controls teneurin-latrophilin interaction and synapse specificity by a shape-shifting mechanism.
Nat Commun, 11, 2020
8DZJ
DownloadVisualize
BU of 8dzj by Molmil
Cryo-EM structure of Acidibacillus sulfuroxidans Cas12f in complex with sgRNA and target DNA
Descriptor: Non-target DNA strand, OrfB_Zn_ribbon domain-containing protein, ZINC ION, ...
Authors:Liu, C, Zhao, M.
Deposit date:2022-08-07
Release date:2023-07-12
Last modified:2023-11-08
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:An engineered hypercompact CRISPR-Cas12f system with boosted gene-editing activity.
Nat.Chem.Biol., 19, 2023
7KEO
DownloadVisualize
BU of 7keo by Molmil
Crystal structure of K29-linked di-ubiquitin in complex with synthetic antigen binding fragment
Descriptor: PHOSPHATE ION, Synthetic antigen binding fragment, heavy chain, ...
Authors:Yu, Y, Zheng, Q, Erramilli, S, Pan, M, Kossiakoff, A, Liu, L, Zhao, M.
Deposit date:2020-10-11
Release date:2021-07-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:K29-linked ubiquitin signaling regulates proteotoxic stress response and cell cycle.
Nat.Chem.Biol., 17, 2021
5ZGD
DownloadVisualize
BU of 5zgd by Molmil
hnRNPA1 reversible amyloid core GFGGNDNFG (residues 209-217) determined by X-ray
Descriptor: GLY-PHE-GLY-GLY-ASN-ASP-ASN-PHE-GLY
Authors:Gui, X, Xie, M, Zhao, M, Luo, F, He, J, Li, D, Liu, C.
Deposit date:2018-03-08
Release date:2019-04-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Structural basis for reversible amyloids of hnRNPA1 elucidates their role in stress granule assembly.
Nat Commun, 10, 2019
5ZGL
DownloadVisualize
BU of 5zgl by Molmil
hnRNP A1 segment GGGYGGS (residues 234-240)
Descriptor: 7-mer peptide from Heterogeneous nuclear ribonucleoprotein A1
Authors:Xie, M, Luo, F, Gui, X, Zhao, M, He, J, Li, D, Liu, C.
Deposit date:2018-03-09
Release date:2019-04-03
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Structural basis for reversible amyloids of hnRNPA1 elucidates their role in stress granule assembly.
Nat Commun, 10, 2019
7KFZ
DownloadVisualize
BU of 7kfz by Molmil
Structure of a ternary KRas(G13D)-SOS complex
Descriptor: GTPase KRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Liu, C, Moghadamchargari, Z, Laganowsky, A, Zhao, M.
Deposit date:2020-10-15
Release date:2021-03-31
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Molecular assemblies of the catalytic domain of SOS with KRas and oncogenic mutants.
Proc.Natl.Acad.Sci.USA, 118, 2021
3K1R
DownloadVisualize
BU of 3k1r by Molmil
Structure of harmonin NPDZ1 in complex with the SAM-PBM of Sans
Descriptor: Harmonin, Usher syndrome type-1G protein
Authors:Pan, L, Yan, J, Zhang, M.
Deposit date:2009-09-28
Release date:2010-01-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of the harmonin/sans complex reveals an unexpected interaction mode of the two Usher syndrome proteins
Proc.Natl.Acad.Sci.USA, 107, 2010
3HPK
DownloadVisualize
BU of 3hpk by Molmil
Oxidized dimeric PICK1 PDZ in complex with the carboxyl tail peptide of GluR2
Descriptor: GLYCEROL, PRKCA-binding protein,9-mer peptide of THE GLUR2 SUBUNIT
Authors:Yu, J, Shi, Y, Zhang, M.
Deposit date:2009-06-04
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Redox-Regulated Lipid Membrane Binding of the PICK1 PDZ Domain.
Biochemistry, 49, 2010
2FZ0
DownloadVisualize
BU of 2fz0 by Molmil
Identification of yeast R-SNARE Nyv1p as a novel longin domain protein
Descriptor: v-SNARE component of the vacuolar SNARE complex involved in vesicle fusion; inhibits ATP-dependent Ca(2+) transport activity of Pmc1p in the vacuolar membrane; Nyv1p
Authors:Wen, W, Zhang, M.
Deposit date:2006-02-08
Release date:2006-03-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Identification of the Yeast R-SNARE Nyv1p as a Novel Longin Domain-containing Protein
Mol.Cell.Biol., 17, 2006
3HPM
DownloadVisualize
BU of 3hpm by Molmil
Oxidized dimeric PICK1 PDZ C46G mutant in complex with the carboxyl tail peptide of GluR2
Descriptor: PRKCA-binding protein,9-mer peptide of THE GLUR2 SUBUNIT
Authors:Yu, J, Shi, Y, Zhang, M.
Deposit date:2009-06-04
Release date:2010-06-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Redox-Regulated Lipid Membrane Binding of the PICK1 PDZ Domain.
Biochemistry, 49, 2010
2FJL
DownloadVisualize
BU of 2fjl by Molmil
Solution Structure of the Split PH domain in Phospholipase C-gamma1
Descriptor: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1
Authors:Wen, W, Zhang, M.
Deposit date:2006-01-03
Release date:2006-03-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structural Characterization of the Split Pleckstrin Homology Domain in Phospholipase C-{gamma}1 and Its Interaction with TRPC3
J.Biol.Chem., 281, 2006
3WB8
DownloadVisualize
BU of 3wb8 by Molmil
Crystal Structure of MyoVa-GTD
Descriptor: 1,2-ETHANEDIOL, Unconventional myosin-Va
Authors:Wei, Z, Liu, X, Yu, C, Zhang, M.
Deposit date:2013-05-13
Release date:2013-07-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:Structural basis of cargo recognitions for class V myosins
Proc.Natl.Acad.Sci.USA, 110, 2013
3WYO
DownloadVisualize
BU of 3wyo by Molmil
Heterodimeric myoglobin formed by domain swapping
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lin, Y.W, Nagao, S, Zhang, M, Shomura, Y, Higuchi, Y, Hirota, S.
Deposit date:2014-09-04
Release date:2014-11-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational design of heterodimeric protein using domain swapping for myoglobin.
Angew.Chem.Int.Ed.Engl., 54, 2015
3WP1
DownloadVisualize
BU of 3wp1 by Molmil
Phosphorylation-dependent interaction between tumor suppressors Dlg and Lgl
Descriptor: Disks large homolog 4, Lethal(2) giant larvae protein homolog 2, SULFATE ION
Authors:Zhu, J, Shang, Y, Wan, Q, Xia, Y, Chen, J, Du, Q, Zhang, M.
Deposit date:2014-01-08
Release date:2014-03-19
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.804 Å)
Cite:Phosphorylation-dependent interaction between tumor suppressors Dlg and Lgl
Cell Res., 24, 2014
3WP0
DownloadVisualize
BU of 3wp0 by Molmil
Crystal structure of Dlg GK in complex with a phosphor-Lgl2 peptide
Descriptor: Disks large homolog 4, GLYCEROL, Lethal(2) giant larvae protein homolog 2
Authors:Zhu, J, Shang, Y, Wan, Q, Xia, Y, Chen, J, Du, Q, Zhang, M.
Deposit date:2014-01-08
Release date:2014-03-19
Last modified:2014-04-30
Method:X-RAY DIFFRACTION (2.039 Å)
Cite:Phosphorylation-dependent interaction between tumor suppressors Dlg and Lgl
Cell Res., 24, 2014
3M00
DownloadVisualize
BU of 3m00 by Molmil
Crystal Structure of 5-epi-aristolochene synthase M4 mutant complexed with (2-cis,6-trans)-2-fluorofarnesyl diphosphate
Descriptor: (2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, Aristolochene synthase, MAGNESIUM ION
Authors:Noel, J.P, Dellas, N, Faraldos, J.A, Zhao, M, Hess Jr, B.A, Smentek, L, Coates, R.M, O'Maille, P.E.
Deposit date:2010-03-02
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.
Acs Chem.Biol., 5, 2010
3M02
DownloadVisualize
BU of 3m02 by Molmil
The Crystal Structure of 5-epi-aristolochene synthase complexed with (2-cis,6-trans)-2-fluorofarnesyl diphosphate
Descriptor: (2E,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, Aristolochene synthase, MAGNESIUM ION
Authors:Noel, J.P, Dellas, N, Faraldos, J.A, Zhao, M, Hess Jr, B.A, Smentek, L, Coates, R.M, O'Maille, P.E.
Deposit date:2010-03-02
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.
Acs Chem.Biol., 5, 2010
5J6P
DownloadVisualize
BU of 5j6p by Molmil
Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe
Descriptor: Kinetochore protein mis18, ZINC ION
Authors:Wang, C, Shao, C, Zhang, M, Zhang, X, Zang, J.
Deposit date:2016-04-05
Release date:2017-11-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of Mis18(17-118) from Schizosaccharomyces pombe
To Be Published
3OS8
DownloadVisualize
BU of 3os8 by Molmil
Estrogen Receptor
Descriptor: 4-[1-benzyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2021-10-06
Method:X-RAY DIFFRACTION (2.031 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3OSA
DownloadVisualize
BU of 3osa by Molmil
Estrogen Receptor
Descriptor: 4-[1-(3-methylbut-2-en-1-yl)-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
3M01
DownloadVisualize
BU of 3m01 by Molmil
The Crystal Structure of 5-epi-aristolochene synthase complexed with (2-trans,6-trans)-2-fluorofarnesyl diphosphate
Descriptor: (2Z,6E)-2-fluoro-3,7,11-trimethyldodeca-2,6,10-trien-1-yl trihydrogen diphosphate, ACETATE ION, Aristolochene synthase, ...
Authors:Noel, J.P, Dellas, N, Faraldos, J.A, Zhao, M, Hess Jr, B.A, Smentek, L, Coates, R.M, O'Maille, P.E.
Deposit date:2010-03-02
Release date:2010-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural elucidation of cisoid and transoid cyclization pathways of a sesquiterpene synthase using 2-fluorofarnesyl diphosphates.
Acs Chem.Biol., 5, 2010
3OS9
DownloadVisualize
BU of 3os9 by Molmil
Estrogen Receptor
Descriptor: 4-[1-allyl-7-(trifluoromethyl)-1H-indazol-3-yl]benzene-1,3-diol, Estrogen receptor
Authors:Bruning, J, Parent, A.A, Gil, G, Zhao, M, Nowak, J, Pace, M.C, Smith, C.L, Afonine, P.V, Adams, P.D, Katzenellenbogen, J.A, Nettles, K.W.
Deposit date:2010-09-08
Release date:2010-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Coupling of receptor conformation and ligand orientation determine graded activity.
Nat.Chem.Biol., 6, 2010
8F4F
DownloadVisualize
BU of 8f4f by Molmil
RT XFEL structure of Photosystem II 500 microseconds after the third illumination at 2.03 Angstrom resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Bhowmick, A, Hussein, R, Bogacz, I, Simon, P.S, Ibrahim, M, Chatterjee, R, Doyle, M.D, Cheah, M.H, Fransson, T, Chernev, P, Kim, I.-S, Makita, H, Dasgupta, M, Kaminsky, C.J, Zhang, M, Gatcke, J, Haupt, S, Nangca, I.I, Keable, S.M, Aydin, O, Tono, K, Owada, S, Gee, L.B, Fuller, F.D, Batyuk, A, Alonso-Mori, R, Holton, J.M, Paley, D.W, Moriarty, N.W, Mamedov, F, Adams, P.D, Brewster, A.S, Dobbek, H, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yano, J, Yachandra, V.K.
Deposit date:2022-11-10
Release date:2023-03-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structural evidence for intermediates during O 2 formation in photosystem II.
Nature, 617, 2023

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon