PDB: 216426 resultsInfo pagesStatus searchChemie searchBIRD

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5AY8	Crystal structure of human nucleosome containing H3.Y Descriptor: CHLORIDE ION, DNA (146-MER), H3.Y, ... Authors: Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H. Deposit date: 2015-08-10 Release date: 2016-04-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and function of human histone H3.Y nucleosome Nucleic Acids Res., 44, 2016
1WPX	Crystal structure of carboxypeptidase Y inhibitor complexed with the cognate proteinase Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Carboxypeptidase Y, Carboxypeptidase Y inhibitor, ... Authors: Mima, J, Hayashida, M, Fujii, T, Narita, Y, Hayashi, R, Ueda, M, Hata, Y. Deposit date: 2004-09-14 Release date: 2005-03-01 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of the carboxypeptidase y inhibitor i(c) in complex with the cognate proteinase reveals a novel mode of the proteinase-protein inhibitor interaction J.Mol.Biol., 346, 2005
8F2E	Crystal Structure of the CoV-Y domain of SARS-CoV-2 Nonstructural Protein 3 Descriptor: GLYCEROL, Papain-like protease nsp3 Authors: Li, Y, Shi, W, Hao, B. Deposit date: 2022-11-07 Release date: 2023-03-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Crystal structure of the CoV-Y domain of SARS-CoV-2 nonstructural protein 3. Sci Rep, 13, 2023
7YOO	Complex structure of Neuropeptide Y Y2 receptor in complex with NPY and Gi Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ... Authors: Kang, H, Park, C, Kim, J, Choi, H.-J. Deposit date: 2022-08-01 Release date: 2023-03-22 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Structural basis for Y2 receptor-mediated neuropeptide Y and peptide YY signaling. Structure, 31, 2023
8RJX	Solution structure of osmoregulator OsmY from E. coli. Descriptor: Osmotically-inducible protein Y Authors: Iyer, A, Luo, Y, le Paige, U.B.A, van Ingen, H. Deposit date: 2023-12-22 Release date: 2024-07-03 Last modified: 2024-07-17 Method: SOLUTION NMR Cite: The Structure and Function of the Bacterial Osmotically Inducible Protein Y. J.Mol.Biol., 436, 2024
7YON	Complex structure of Neuropeptide Y Y2 receptor in complex with PYY(3-36) and Gi Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ... Authors: Kang, H, Park, C, Kim, J, Choi, H.-J. Deposit date: 2022-08-01 Release date: 2023-03-22 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural basis for Y2 receptor-mediated neuropeptide Y and peptide YY signaling. Structure, 31, 2023
8K6N	Structural complex of neuropeptide Y receptor 2 Descriptor: C-flanking peptide of NPY, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Shen, S.Y, Zhao, C, Shao, Z.H. Deposit date: 2023-07-25 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural complex of neuropeptide Y receptor 2 To Be Published
8K6M	Structural complex of neuropeptide Y receptor 1 Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-2, ... Authors: Shen, S.Y, Zhao, C, Shao, Z.H. Deposit date: 2023-07-25 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural complex of neuropeptide Y receptor 1 To Be Published
8K6O	Structural complex of neuropeptide Y receptor 1 Descriptor: C-flanking peptide of NPY, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Shen, S.Y, Zhao, C, Shao, Z.H. Deposit date: 2023-07-25 Release date: 2024-07-31 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural complex of neuropeptide Y receptor 1 To Be Published
6KBB	Role of the DEF/Y motif of Swc5 in histone H2A.Z deposition Descriptor: Histone H2A type 1-D, Histone H2B type 2-E, SWR1-complex protein 5 Authors: Huang, Y, Zhou, Z. Deposit date: 2019-06-24 Release date: 2020-01-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.365 Å) Cite: Role of a DEF/Y motif in histone H2A-H2B recognition and nucleosome editing. Proc.Natl.Acad.Sci.USA, 117, 2020
1VDV	Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form Descriptor: 1-[3-CYANO-4-(NEOPENTYLOXY)PHENYL]-1H-PYRAZOLE-4-CARBOXYLIC ACID, ACETIC ACID, CALCIUM ION, ... Authors: Fukunari, A, Okamoto, K, Nishino, T, Eger, B.T, Pai, E.F, Kamezawa, M, Yamada, I, Kato, N. Deposit date: 2004-03-25 Release date: 2004-12-21 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Y-700 [1-[3-Cyano-4-(2,2-dimethylpropoxy)phenyl]-1H-pyrazole-4-carboxylic acid]: a potent xanthine oxidoreductase inhibitor with hepatic excretion J.Pharmacol.Exp.Ther., 311, 2004
6CU1	X-ray structure of the S. typhimurium YrlA effector-binding module Descriptor: MAGNESIUM ION, SULFATE ION, YrlA effector-binding module Authors: Wang, W, Chen, X, Wolin, S.L, Xiong, Y. Deposit date: 2018-03-23 Release date: 2018-10-31 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Basis for tRNA Mimicry by a Bacterial Y RNA. Structure, 26, 2018
7CVO	crystal structure of Arabidopsis CO CCT domain in complex with NF-YB3/YC4 and FT CORE2 DNA Descriptor: Chimera of Nuclear transcription factor Y subunit C-4 and Zinc finger protein CONSTANS, FT CORE2 DNA forward strand, FT CORE2 DNA reverse strand, ... Authors: Lv, X, Du, J. Deposit date: 2020-08-26 Release date: 2021-06-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural insights into the multivalent binding of the Arabidopsis FLOWERING LOCUS T promoter by the CO-NF-Y master transcription factor complex. Plant Cell, 33, 2021
7VGX	Neuropeptide Y Y1 Receptor (NPY1R) in Complex with G Protein and its endogeneous Peptide-Agonist Neuropeptide Y (NPY) Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ... Authors: Park, C, Kim, J, Jeong, H, Kang, H, Bang, I, Choi, H.-J. Deposit date: 2021-09-19 Release date: 2022-02-23 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis of neuropeptide Y signaling through Y1 receptor Nat Commun, 13, 2022
7CVQ	crystal structure of Arabidopsis CO CCT domain in complex with NF-YB2/YC3 and FT CORE1 DNA Descriptor: Chimera of Nuclear transcription factor Y subunit C-3 and Zinc finger protein CONSTANS, FT CORE1 DNA forward strand, FT CORE1 DNA reverse strand, ... Authors: Lv, X, Du, J. Deposit date: 2020-08-26 Release date: 2021-06-16 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural insights into the multivalent binding of the Arabidopsis FLOWERING LOCUS T promoter by the CO-NF-Y master transcription factor complex. Plant Cell, 33, 2021
6A6J	Crystal structure of Zebra fish Y-box protein1 (YB-1) Cold-shock domain in complex with 6mer m5C RNA Descriptor: RNA (5'-R(P*CP*AP*UP*(5MC)P*U)-3'), ZINC ION, Zebra fish Y-box protein1 (YB-1) Authors: Zhang, M.M, Wu, B.X, Huang, Y, Ma, J.B. Deposit date: 2018-06-28 Release date: 2019-06-19 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.255 Å) Cite: RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay. Mol.Cell, 75, 2019
4QW9	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWC	Ternary Crystal Structures of a Y-family DNA polymerase DPO4 from Sulfobus Solfataricus in Comples with DNA and L-DCDP Descriptor: 4-amino-1-{2-deoxy-5-O-[(R)-hydroxy(phosphonooxy)phosphoryl]-beta-L-erythro-pentofuranosyl}pyrimidin-2(1H)-one, ACETATE ION, CALCIUM ION, ... Authors: Vyas, R, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWE	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)FTC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWD	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND (-)3TC-PPNP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QW8	TERNARY CRYSTAL STRUCTURES of A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS IN COMPLEX WITH DNA AND D-DCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.29 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
4QWA	TERNARY CRYSTAL STRUCTURES OF A Y-FAMILY DNA POLYMERASE DPO4 FROM SULFOLOBUS SOLFATARICUS in COMPLEX WITH DNA AND (-)3TC-DP Descriptor: CALCIUM ION, DNA (5'-D(P*CP*AP*GP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*C)-3'), ... Authors: Gaur, V, Suo, Z. Deposit date: 2014-07-16 Release date: 2014-08-27 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and kinetic insights into binding and incorporation of L-nucleotide analogs by a Y-family DNA polymerase. Nucleic Acids Res., 42, 2014
5YWS	Crystal structure of TREX1 in complex with a Y structured DNA Descriptor: A STEM LOOP DNA WITH Y-STRUCTURAL TERMINAL, MAGNESIUM ION, Three-prime repair exonuclease 1 Authors: Hsiao, Y.Y. Deposit date: 2017-11-30 Release date: 2018-05-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural basis for overhang excision and terminal unwinding of DNA duplexes by TREX1 PLoS Biol., 16, 2018
5YTT	Crystal structure of YB1 cold-shock domain in complex with UCAUGU Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*UP*CP*AP*UP*GP*U)-3'), SULFATE ION Authors: Yang, X, Huang, Y. Deposit date: 2017-11-20 Release date: 2018-12-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA. J.Biol.Chem., 294, 2019
5YTS	Crystal structure of YB1 cold-shock domain in complex with UCUUCU Descriptor: Nuclease-sensitive element-binding protein 1, RNA (5'-R(P*CP*UP*UP*C)-3'), SULFATE ION Authors: Yang, X, Huang, Y. Deposit date: 2017-11-20 Release date: 2018-12-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA. J.Biol.Chem., 294, 2019

 

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