Legacy flatfile-incompatible PDB entries

6VMI	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) Descriptor: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ... Authors: Sharma, M.R, Koripella, R.K, Agrawal, R.K. Deposit date: 2020-01-28 Release date: 2020-08-05 Last modified: 2021-02-17 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation. Nat Commun, 11, 2020
6VU3	Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R. Deposit date: 2020-02-14 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VVH	Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1) in complex with lysine Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, ... Authors: Lee, M, Hall, C.J. Deposit date: 2020-02-18 Release date: 2021-02-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.792 Å) Cite: Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms. Febs J., 288, 2021
6VVI	Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1) Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, GLYCEROL, ... Authors: Lee, M, Hall, C.J. Deposit date: 2020-02-18 Release date: 2021-02-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.145 Å) Cite: Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms. Febs J., 288, 2021
6VWL	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. Deposit date: 2020-02-20 Release date: 2020-06-03 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
6VWM	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. Deposit date: 2020-02-20 Release date: 2020-06-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
6VWN	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. Deposit date: 2020-02-20 Release date: 2020-06-03 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
6VYQ	Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYR	Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYS	Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYT	Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Ebright, R.H, Su, M. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (14 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYU	Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYW	Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYX	Escherichia coli transcription-translation complex C4 (TTC-C4) containing mRNA with a 21 nt long spacer, transcription factor NusG, and fMet-tRNAs at P-site and E-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYY	Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VYZ	Escherichia coli transcription-translation complex C6 (TTC-C6) containing mRNA with a 21 nt long spacer, NusA, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (9.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZ2	Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (10 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZ3	Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZ5	Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (8.9 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZ7	Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-27 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (7 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6VZJ	Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... Authors: Molodtsov, V, Wang, C, Su, M, Ebright, R.H. Deposit date: 2020-02-28 Release date: 2020-09-02 Last modified: 2020-09-23 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis of transcription-translation coupling. Science, 369, 2020
6W19	Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus Descriptor: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ... Authors: Liu, W, Cui, Y.X, Wang, C.Y, Li, Z.H, Gong, D.Y, Dai, X.H, Bi, G.Q, Sun, R, Zhou, Z.H. Deposit date: 2020-03-03 Release date: 2020-07-15 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (5.5 Å) Cite: Structures of capsid and capsid-associated tegument complex inside the Epstein-Barr virus. Nat Microbiol, 5, 2020
6W1N	Pig Ryanodine Receptor (WT) in 5mM EGTA condition Descriptor: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine Receptor, ZINC ION Authors: Woll, K.W, Haji-Ghassemi, O, Van Petegem, F. Deposit date: 2020-03-04 Release date: 2021-01-06 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Pathological conformations of disease mutant Ryanodine Receptors revealed by cryo-EM. Nat Commun, 12, 2021
6W1O	RT XFEL structure of the dark-stable state of Photosystem II (0F, S1-rich) at 2.08 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. Deposit date: 2020-03-04 Release date: 2020-05-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020
6W1P	RT XFEL structure of the one-flash state of Photosystem II (1F, S2-rich) at 2.26 Angstrom resolution Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... Authors: Ibrahim, M, Fransson, T, Chatterjee, R, Cheah, M.H, Hussein, R, Lassalle, L, Sutherlin, K.D, Young, I.D, Fuller, F.D, Gul, S, Kim, I.-S, Simon, P.S, de Lichtenberg, C, Chernev, P, Bogacz, I, Pham, C, Orville, A.M, Saichek, N, Northen, T.R, Batyuk, A, Carbajo, S, Alonso-Mori, R, Tono, K, Owada, S, Bhowmick, A, Bolotovski, R, Mendez, D, Moriarty, N.W, Holton, J.M, Dobbek, H, Brewster, A.S, Adams, P.D, Sauter, N.K, Bergmann, U, Zouni, A, Messinger, J, Kern, J, Yachandra, V.K, Yano, J. Deposit date: 2020-03-04 Release date: 2020-05-13 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Untangling the sequence of events during the S2→ S3transition in photosystem II and implications for the water oxidation mechanism. Proc.Natl.Acad.Sci.USA, 117, 2020

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