PDB形式変換不可の PDB エントリー

6V10	genome-containing AAV8 particles 分子名称: Capsid protein, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-19 公開日 2019-12-11 最終更新日 2025-06-04 実験手法 ELECTRON MICROSCOPY (3.77 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V12	Empty AAV8 particles 分子名称: Capsid protein 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-19 公開日 2019-12-11 最終更新日 2025-05-14 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1G	Genome-containing AAVrh.10 分子名称: Capsid protein VP1, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-20 公開日 2019-12-11 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1T	Empty AAVrh.39 particle 分子名称: Capsid protein VP1 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-21 公開日 2019-12-11 最終更新日 2025-05-14 実験手法 ELECTRON MICROSCOPY (3.39 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V1Z	genome-containing AAVrh.39 particles 分子名称: Capsid protein VP1, DNA (5'-D(*CP*A)-3') 著者 Mietzsch, M, Agbandje-McKenna, M. 登録日 2019-11-21 公開日 2019-12-11 最終更新日 2025-06-04 実験手法 ELECTRON MICROSCOPY (3.58 Å) 主引用文献 Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol., 94, 2020
6V39	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2025-03-19 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3A	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2025-03-19 実験手法 ELECTRON MICROSCOPY (2.82 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3B	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state 分子名称: 16s Ribosomal RNA, 23s ribosomal RNA, 30S ribosomal protein S10, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2025-03-19 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3D	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit 分子名称: 23s ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2025-03-19 実験手法 ELECTRON MICROSCOPY (2.95 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V3E	Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit 分子名称: 16s Ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Morgan, C.E, Yu, E.W. 登録日 2019-11-25 公開日 2020-02-05 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Cryo-electron Microscopy Structure of the Acinetobacter baumannii 70S Ribosome and Implications for New Antibiotic Development. Mbio, 11, 2020
6V41	crystal structure of CDY1 chromodomain bound to H3K9me3 分子名称: Histone H3.1 Peptide, Testis-specific chromodomain protein Y 1, UNKNOWN ATOM OR ION 著者 Qin, S, Tempel, W, Walker, J.R, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2019-11-27 公開日 2019-12-25 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.603 Å) 主引用文献 Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol, 27, 2020
6V6S	Structure of the native human gamma-tubulin ring complex 分子名称: ADENOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-DIPHOSPHATE, Gamma-tubulin complex component 2, ... 著者 Wieczorek, M, Urnavicius, L, Ti, S, Molloy, K.R, Chait, B.T, Kapoor, T.M. 登録日 2019-12-05 公開日 2020-01-01 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Asymmetric Molecular Architecture of the Human gamma-Tubulin Ring Complex. Cell, 180, 2020
6V8I	Composite atomic model of the Staphylococcus aureus phage 80alpha baseplate 分子名称: Distal Tail Protein, gp58, FE (III) ION, ... 著者 Kizziah, J.L, Dokland, T. 登録日 2019-12-11 公開日 2020-03-04 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of the host cell recognition and penetration machinery of a Staphylococcus aureus bacteriophage. Plos Pathog., 16, 2020
6V8W	CDYL2 chromodomain in complex with a synthetic peptide 分子名称: Chromodomain Y-like protein 2, IVA-PHE-ALA-PHE-5T3-SER-NH2, UNKNOWN ATOM OR ION 著者 Dong, C, Tempel, W, James, L.I, Lamb, K.N, Bountra, C, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium, Structural Genomics Consortium (SGC) 登録日 2019-12-12 公開日 2020-01-15 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol, 27, 2020
6V9T	Tudor domain of TDRD3 in complex with a small molecule 分子名称: 4-methyl-2,3,4,5,6,7-hexahydrodicyclopenta[b,e]pyridin-8(1H)-imine, Tudor domain-containing protein 3, UNKNOWN ATOM OR ION 著者 Li, W, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC) 登録日 2019-12-16 公開日 2019-12-25 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.154 Å) 主引用文献 A small molecule antagonist of SMN disrupts the interaction between SMN and RNAP II. Nat Commun, 13, 2022
6VE7	The inner junction complex of Chlamydomonas reinhardtii doublet microtubule 分子名称: Cilia- and flagella-associated protein 20, FAP276, FAP52, ... 著者 Khalifa, A.A.Z, Ichikawa, M, Bui, K.H. 登録日 2019-12-30 公開日 2020-02-05 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 The inner junction complex of the cilia is an interaction hub that involves tubulin post-translational modifications. Elife, 9, 2020
6VGS	Alpha-ketoisovalerate decarboxylase (KivD) from Lactococcus lactis, thermostable mutant 分子名称: Alpha-keto acid decarboxylase, MAGNESIUM ION, THIAMINE DIPHOSPHATE 著者 Chan, S, Korman, T.P, Sawaya, M.R, Bowie, J.U. 登録日 2020-01-08 公開日 2020-08-05 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Isobutanol production freed from biological limits using synthetic biochemistry. Nat Commun, 11, 2020
6VHO	Glycoside hydrolase family 16 endo-glucanase from Bacteroides ovatus in complex with G4G4G3G-NHCOCH2Br 分子名称: Glycosyl hydrolase family 16, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-3)-N-acetyl-beta-D-glucopyranosylamine 著者 Tamura, K, Brumer, H, van Petegem, F. 登録日 2020-01-10 公開日 2021-01-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.148 Å) 主引用文献 Orthogonal Active-Site Labels for Mixed-Linkage endo-beta-Glucanases. Acs Chem.Biol., 16, 2021
6VLZ	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI) 分子名称: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ... 著者 Sharma, M.R, Koripella, R.K, Agrawal, R.K. 登録日 2020-01-27 公開日 2020-08-05 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation. Nat Commun, 11, 2020
6VMI	Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII) 分子名称: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ... 著者 Sharma, M.R, Koripella, R.K, Agrawal, R.K. 登録日 2020-01-28 公開日 2020-08-05 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation. Nat Commun, 11, 2020
6VU3	Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ... 著者 Molodtsov, V, Wang, C, Su, M, Ebright, R. 登録日 2020-02-14 公開日 2020-09-02 最終更新日 2024-11-13 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structural basis of transcription-translation coupling. Science, 369, 2020
6VVH	Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1) in complex with lysine 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, ... 著者 Lee, M, Hall, C.J. 登録日 2020-02-18 公開日 2021-02-24 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.792 Å) 主引用文献 Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms. Febs J., 288, 2021
6VVI	Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1) 分子名称: 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, GLYCEROL, ... 著者 Lee, M, Hall, C.J. 登録日 2020-02-18 公開日 2021-02-24 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.145 Å) 主引用文献 Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms. Febs J., 288, 2021
6VWL	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. 登録日 2020-02-20 公開日 2020-06-03 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020
6VWM	70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Loerch, S, Bao, C, Ling, C, Korostelev, A.A, Grigorieff, N, Ermolenko, D.M. 登録日 2020-02-20 公開日 2020-06-03 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding. Elife, 9, 2020

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