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Legacy flatfile-incompatible PDB entries
6YXX
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BU of 6yxx by Molmil
State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Descriptor: 12S ribosomal RNA, 50S ribosomal protein L13, putative, ...
Authors:Jaskolowski, M, Ramrath, D.J.F, Bieri, P, Niemann, M, Mattei, S, Calderaro, S, Leibundgut, M.A, Horn, E.K, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2020-05-04
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Mol.Cell, 79, 2020
6YXY
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State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Descriptor: 12S ribosomal RNA, ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Jaskolowski, M, Ramrath, D.J.F, Bieri, P, Niemann, M, Mattei, S, Calderaro, S, Leibundgut, M.A, Horn, E.K, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2020-05-04
Release date:2020-10-14
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Mol.Cell, 79, 2020
6YXZ
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BU of 6yxz by Molmil
Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
Descriptor: Beta-N-acetylhexosaminidase, CHLORIDE ION, GLYCEROL, ...
Authors:He, Y, Jin, Y.
Deposit date:2020-05-04
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
To Be Published
6YY5
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BU of 6yy5 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with TCV_L5
Descriptor: FE (III) ION, Ferric enterobactin receptor, ~{N}-[2-[[(2~{S})-3-[[(2~{S})-3-[[1-[2-[2-[2-[4-[4-[5-(acetamidomethyl)-2-oxidanylidene-1,3-oxazolidin-3-yl]-2-fluoranyl-phenyl]piperazin-1-yl]-2-oxidanylidene-ethoxy]ethoxy]ethyl]-1,2,3-triazol-4-yl]methylamino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-[[2,3-bis(oxidanyl)phenyl]carbonylamino]-3-oxidanylidene-propyl]amino]-2-oxidanylidene-ethyl]-2,3-bis(oxidanyl)benzamide
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-04
Release date:2020-07-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.717 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6YYN
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BU of 6yyn by Molmil
Structure of Cathepsin S in complex with Compound 14
Descriptor: CITRATE ANION, Cathepsin S, SULFATE ION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYO
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BU of 6yyo by Molmil
Structure of Cathepsin S in complex with Compound 1
Descriptor: 1,2-ETHANEDIOL, 6-(4-methylsulfonylpiperazin-1-yl)-[1,2,4]triazolo[4,3-b]pyridazine, CITRATE ANION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYP
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BU of 6yyp by Molmil
Structure of Cathepsin S in complex with Compound 2
Descriptor: 1-(furan-2-ylmethyl)-5-(trifluoromethyl)benzimidazol-2-amine, ACETATE ION, Cathepsin S, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYQ
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BU of 6yyq by Molmil
Structure of Cathepsin S in complex with Compound 3
Descriptor: (6~{R})-2-phenyl-5,6,7,8-tetrahydroquinazolin-6-amine, Cathepsin S
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYR
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BU of 6yyr by Molmil
Structure of Cathepsin S in complex with Compound 20b
Descriptor: (2~{R})-~{N}-(2-azanylideneethyl)-2-[2-(3-methyl-1,2-oxazol-5-yl)ethanoylamino]-3-(4-pyridin-2-ylpiperazin-1-yl)sulfonyl-propanamide, 1,2-ETHANEDIOL, CITRATE ANION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YZ3
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BU of 6yz3 by Molmil
PqsR (MvfR) in complex with antagonist 19
Descriptor: 1,2-ETHANEDIOL, 6-chloranyl-3-[(2-hexyl-2,3-dihydro-1,3-thiazol-4-yl)methyl]quinazolin-4-one, LysR family transcriptional regulator
Authors:Richardson, W.K, Emsley, J.
Deposit date:2020-05-06
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6YZ7
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BU of 6yz7 by Molmil
H11-D4, SARS-CoV-2 RBD, CR3022 ternary complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Cr3022, Antibody light chain, ...
Authors:Naismith, J.H, Ren, J, Zhou, D, Zhao, Y, Stuart, D.I.
Deposit date:2020-05-06
Release date:2020-06-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural characterisation of a nanobody derived from a naive library that neutralises SARS-CoV-2
To Be Published, 2020
6YZD
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BU of 6yzd by Molmil
Crystal structure of the M295A variant of Ssl1
Descriptor: COPPER (II) ION, Copper oxidase, SULFATE ION
Authors:Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
Deposit date:2020-05-06
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6YZF
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BU of 6yzf by Molmil
Crystal structure of the M295Y variant of Ssl1
Descriptor: COPPER (II) ION, Copper oxidase, GLU-HIS-SER, ...
Authors:Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
Deposit date:2020-05-06
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.684 Å)
Cite:Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6YZY
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BU of 6yzy by Molmil
Crystal structure of the M295V variant of Ssl1
Descriptor: COPPER (II) ION, Copper oxidase, SULFATE ION
Authors:Mielenbrink, S, Olbrich, A, Urlacher, V, Span, I.
Deposit date:2020-05-07
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.282 Å)
Cite:Effect of the axial ligand mutation on spectral and structural properties of Ssl1 laccase
To Be Published
6Z07
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BU of 6z07 by Molmil
PqsR (MvfR) in complex with antagonist 12
Descriptor: 3-[(2-~{tert}-butyl-1,3-thiazol-4-yl)methyl]-6-chloranyl-quinazolin-4-one, GLYCEROL, Transcriptional regulator MvfR
Authors:Richardson, W.K, Emsley, J.
Deposit date:2020-05-07
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6Z0U
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BU of 6z0u by Molmil
CryoEM structure of the Chikungunya virus nsP1 complex
Descriptor: Polyprotein P1234, ZINC ION
Authors:Reguera, J, Jones, R, Arranz-Avila, R.
Deposit date:2020-05-11
Release date:2020-10-14
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Capping pores of alphavirus nsP1 gate membranous viral replication factories.
Nature, 589, 2021
6Z14
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BU of 6z14 by Molmil
Structure of Bifidobacterium bifidum GH20 beta-N-beta-N-acetylhexosaminidase E553Q variant in complex with 4MU-6SGlcNAc-derived oxazoline
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Beta-N-acetylhexosaminidase, NITRATE ION, ...
Authors:He, Y, Jin, Y, Rizkallah, P, Chen, P.
Deposit date:2020-05-12
Release date:2021-05-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure and activity of the GH20 beta-N-beta-N-acetylhexosaminidase from Bifidobacterium bifidum
To Be Published
6Z17
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BU of 6z17 by Molmil
PqsR (MvfR) in complex with antagonist 6
Descriptor: 6-chloranyl-3-[(2-propan-2-yl-2,3-dihydro-1,3-thiazol-4-yl)methyl]quinazolin-4-one, Transcriptional regulator MvfR
Authors:Richardson, W.K, Emsley, J.
Deposit date:2020-05-12
Release date:2020-09-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Novel quinazolinone inhibitors of the Pseudomonas aeruginosa quorum sensing transcriptional regulator PqsR.
Eur.J.Med.Chem., 208, 2020
6Z1P
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BU of 6z1p by Molmil
Structure of the mitochondrial ribosome from Tetrahymena thermophila
Descriptor: 30S ribosomal protein S15, 30S ribosomal protein S16, 30S ribosomal protein S17, ...
Authors:Tobiasson, V, Amunts, A.
Deposit date:2020-05-14
Release date:2020-06-24
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Elife, 9, 2020
6Z1Q
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BU of 6z1q by Molmil
MAP3K14 (NIK) in complex with DesF-3R/4076
Descriptor: DesF-3R/4076, Mitogen-activated protein kinase kinase kinase 14
Authors:Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R.
Deposit date:2020-05-14
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
6Z1T
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BU of 6z1t by Molmil
MAP3K14 (NIK) in complex with 4S/3694
Descriptor: 4S/3694, Mitogen-activated protein kinase kinase kinase 14
Authors:Jacoby, E, van Vlijmen, H, Querolle, O, Stansfield, I, Meerpoel, L, Versele, M, Hynd, G, Attar, R.
Deposit date:2020-05-14
Release date:2020-07-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:FEP+ calculations predict a stereochemical SAR switch for first-in-class indoline NIK inhibitors for multiple myeloma
Future Drug Discov, 2, 2020
6Z2E
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BU of 6z2e by Molmil
Crystal structure of SARS-CoV-2 Mpro in complex with the activity-based probe, biotin-PEG(4)-Abu-Tle-Leu-Gln-vinylsulfone
Descriptor: (4~{S})-4-[[(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-[3-[2-[2-[2-[2-[5-[(3~{a}~{S},4~{R},6~{a}~{R})-2-oxidanylidene-3,3~{a},4,6~{a}-tetrahydro-1~{H}-thieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]propanoylamino]butanoyl]amino]-3,3-dimethyl-butanoyl]amino]-4-methyl-pentanoyl]amino]-6-methylsulfonyl-hexanamide, 3C-like proteinase, CHLORIDE ION, ...
Authors:Zhang, L, Hilgenfeld, R.
Deposit date:2020-05-15
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of SARS-CoV-2 Mpro in complex with the activity-based probe, biotin-PEG(4)-Abu-Tle-Leu-Gln-vinylsulfone
To Be Published
6Z2N
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BU of 6z2n by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV-L6
Descriptor: 1,2-ETHANEDIOL, BCV-L6, FE (III) ION, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-18
Release date:2021-01-20
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.029 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6Z33
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BU of 6z33 by Molmil
Crystal structure of the ferric enterobactin receptor (PfeA) in complex with BCV
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Ferric enterobactin receptor, ...
Authors:Naismith, J.H, Moynie, L.M.
Deposit date:2020-05-19
Release date:2020-07-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.711 Å)
Cite:Hijacking of the Enterobactin Pathway by a Synthetic Catechol Vector Designed for Oxazolidinone Antibiotic Delivery in Pseudomonas aeruginosa.
Acs Infect Dis., 2022
6Z39
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BU of 6z39 by Molmil
Structure of recombinant human beta-glucocerebrosidase in complex with BODIPY functionalised epoxide activity based probe
Descriptor: (1~{S},2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[4-[4-[(12~{R})-2,2-bis(fluoranyl)-4,6,10,12-tetramethyl-1,3-diaza-2$l^{4}-boratricyclo[7.3.0.0^{3,7}]dodeca-4,6,9-trien-8-yl]butyl]-1,2,3-triazol-1-yl]methyl]-7-oxabicyclo[4.1.0]heptane-2,3,4-triol, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Rowland, R.J, Davies, G.J.
Deposit date:2020-05-19
Release date:2021-06-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Design, Synthesis and Structural Analysis of Glucocerebrosidase Imaging Agents.
Chemistry, 27, 2021

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