Glycogen phosphorylase b in complex with pelargonidin 3-O-beta-D-glucoside

This is a non-PDB format compatible entry.

Summary for 6YVE

DescriptorGlycogen phosphorylase, muscle form, PYRIDOXAL-5'-PHOSPHATE, DIMETHYL SULFOXIDE, ... (5 entities in total)
Functional Keywordstransferase
Biological sourceOryctolagus cuniculus (Rabbit)
Total number of polymer chains1
Total molecular weight98182.07
Primary citation
Drakou, C.E.,Gardeli, C.,Tsialtas, I.,Alexopoulos, S.,Mallouchos, A.,Koulas, S.M.,Tsagkarakou, A.S.,Asimakopoulos, D.,Leonidas, D.D.,Psarra, A.G.,Skamnaki, V.T.
Affinity Crystallography Reveals Binding of Pomegranate Juice Anthocyanins at the Inhibitor Site of Glycogen Phosphorylase: The Contribution of a Sugar Moiety to Potency and Its Implications to the Binding Mode.
J.Agric.Food Chem., 68:10191-10199, 2020
PubMed: 32840370 (PDB entries with the same primary citation)
DOI: 10.1021/acs.jafc.0c04205
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.23040 6.8% 0.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
Download full validation reportDownload
PDB entries from 2020-12-02