- PDB-6qx2: 3.4A structure of benzoisoxazole 3 with S.aureus DNA gyrase and DNA -
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Basic information
Entry
Database: PDB / ID: 6qx2
Title
3.4A structure of benzoisoxazole 3 with S.aureus DNA gyrase and DNA
Components
(DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)- ...) x 3
(DNA gyrase subunit ...) x 9
Keywords
ISOMERASE / Inhibitor / DNA complex
Function / homology
Function and homology information
DNA negative supercoiling activity / DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity / DNA topoisomerase (ATP-hydrolysing) / DNA topological change / DNA-templated DNA replication / chromosome / response to antibiotic / DNA binding / ATP binding / metal ion binding / cytoplasm Similarity search - Function
DNA gyrase, subunit A / DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat / DNA gyrase/topoisomerase IV, subunit A, C-terminal / DNA gyrase C-terminal domain, beta-propeller / Topoisomerase (Topo) IIA-type catalytic domain profile. / DNA gyrase subunit B, TOPRIM domain / DNA gyrase, subunit B / DNA topoisomerase, type IIA, subunit B / DNA topoisomerase, type IIA, alpha-helical domain superfamily / DNA topoisomerase, type IIA, domain A ...DNA gyrase, subunit A / DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat / DNA gyrase/topoisomerase IV, subunit A, C-terminal / DNA gyrase C-terminal domain, beta-propeller / Topoisomerase (Topo) IIA-type catalytic domain profile. / DNA gyrase subunit B, TOPRIM domain / DNA gyrase, subunit B / DNA topoisomerase, type IIA, subunit B / DNA topoisomerase, type IIA, alpha-helical domain superfamily / DNA topoisomerase, type IIA, domain A / DNA topoisomerase, type IIA, domain A, alpha-beta / DNA gyrase/topoisomerase IV, subunit A / DNA Topoisomerase IV / DNA gyrase B subunit, C-terminal / DNA gyrase B subunit, carboxyl terminus / DNA topoisomerase, type IIA, subunit B, domain 2 / DNA gyrase B / DNA topoisomerase, type IIA / DNA topoisomerase, type IIA, conserved site / DNA topoisomerase II signature. / TopoisomeraseII / DNA topoisomerase, type IIA, subunit B, C-terminal / Toprim domain / DNA topoisomerase, type IIA-like domain superfamily / Toprim domain profile. / TOPRIM domain / Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase / Histidine kinase-like ATPases / Histidine kinase/HSP90-like ATPase / Histidine kinase/HSP90-like ATPase superfamily / Ribosomal protein S5 domain 2-type fold, subgroup / Ribosomal protein S5 domain 2-type fold Similarity search - Domain/homology
Chem-JK8 / DNA / DNA (> 10) / DNA gyrase subunit B / DNA gyrase subunit B / DNA gyrase subunit B / DNA gyrase subunit B / DNA gyrase subunit B / DNA gyrase subunit A Similarity search - Component
B: DNA gyrase subunit B,DNA gyrase subunit B A: DNA gyrase subunit A D: DNA gyrase subunit B,DNA gyrase subunit B C: DNA gyrase subunit A E: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') F: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') K: DNA gyrase subunit B,DNA gyrase subunit B J: DNA gyrase subunit A M: DNA gyrase subunit B,DNA gyrase subunit B L: DNA gyrase subunit A N: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') O: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') S: DNA gyrase subunit B,DNA gyrase subunit B R: DNA gyrase subunit A U: DNA gyrase subunit B,DNA gyrase subunit B T: DNA gyrase subunit A V: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') W: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') b: DNA gyrase subunit B,DNA gyrase subunit B a: DNA gyrase subunit A d: DNA gyrase subunit B,DNA gyrase subunit B c: DNA gyrase subunit A e: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') f: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') k: DNA gyrase subunit B,DNA gyrase subunit B j: DNA gyrase subunit A m: DNA gyrase subunit B,DNA gyrase subunit B l: DNA gyrase subunit A n: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') o: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') s: DNA gyrase subunit B,DNA gyrase subunit B r: DNA gyrase subunit A u: DNA gyrase subunit B,DNA gyrase subunit B t: DNA gyrase subunit A v: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') w: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
B: DNA gyrase subunit B,DNA gyrase subunit B A: DNA gyrase subunit A D: DNA gyrase subunit B,DNA gyrase subunit B C: DNA gyrase subunit A E: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') F: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
K: DNA gyrase subunit B,DNA gyrase subunit B J: DNA gyrase subunit A M: DNA gyrase subunit B,DNA gyrase subunit B L: DNA gyrase subunit A N: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') O: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
S: DNA gyrase subunit B,DNA gyrase subunit B R: DNA gyrase subunit A U: DNA gyrase subunit B,DNA gyrase subunit B T: DNA gyrase subunit A V: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') W: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
b: DNA gyrase subunit B,DNA gyrase subunit B a: DNA gyrase subunit A d: DNA gyrase subunit B,DNA gyrase subunit B c: DNA gyrase subunit A e: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') f: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
k: DNA gyrase subunit B,DNA gyrase subunit B j: DNA gyrase subunit A m: DNA gyrase subunit B,DNA gyrase subunit B l: DNA gyrase subunit A n: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') o: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules
s: DNA gyrase subunit B,DNA gyrase subunit B r: DNA gyrase subunit A u: DNA gyrase subunit B,DNA gyrase subunit B t: DNA gyrase subunit A v: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') w: DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*GP*GP*CP*CP*GP*TP*AP*CP*GP*CP*TP*T)-3') hetero molecules