Entry Database : PDB / ID : 6cw3 Structure visualization Downloads & linksTitle Crystal structure of a yeast SAGA transcriptional coactivator Ada2/Gcn5 HAT subcomplex, crystal form 2 ComponentsHistone acetyltransferase GCN5 Transcriptional adapter 2 antibody heavy chain antibody light chain DetailsKeywords GENE REGULATION / Ada2/Gcn5 structureFunction / homology Function and homology informationFunction Domain/homology Component
ADA complex / SAGA-type complex / histone crotonyltransferase activity / SLIK (SAGA-like) complex / replication-born double-strand break repair via sister chromatid exchange / histone H3 acetyltransferase activity / rDNA heterochromatin formation / SAGA complex / protein-lysine-acetyltransferase activity / phosphatidylserine binding ... ADA complex / SAGA-type complex / histone crotonyltransferase activity / SLIK (SAGA-like) complex / replication-born double-strand break repair via sister chromatid exchange / histone H3 acetyltransferase activity / rDNA heterochromatin formation / SAGA complex / protein-lysine-acetyltransferase activity / phosphatidylserine binding / histone acetyltransferase activity / Estrogen-dependent gene expression / chromosome, centromeric region / histone acetyltransferase complex / Ub-specific processing proteases / subtelomeric heterochromatin formation / histone H4K16 acetyltransferase activity / histone H3K56 acetyltransferase activity / histone H3K23 acetyltransferase activity / histone H2AK5 acetyltransferase activity / histone H2AK9 acetyltransferase activity / histone H2BK5 acetyltransferase activity / histone H2BK12 acetyltransferase activity / histone H3K4 acetyltransferase activity / histone H3K27 acetyltransferase activity / histone H3K36 acetyltransferase activity / histone H3K122 acetyltransferase activity / histone H3K18 acetyltransferase activity / histone H3K9 acetyltransferase activity / histone H3K14 acetyltransferase activity / histone H4K5 acetyltransferase activity / histone H4K8 acetyltransferase activity / histone H4K12 acetyltransferase activity / histone acetyltransferase / Transferases; Acyltransferases; Transferring groups other than aminoacyl groups / histone reader activity / : / positive regulation of transcription elongation by RNA polymerase II / transcription coregulator activity / chromatin organization / transcription coactivator activity / chromosome, telomeric region / chromatin remodeling / chromatin binding / regulation of transcription by RNA polymerase II / positive regulation of transcription by RNA polymerase II / zinc ion binding / nucleus / cytosol Similarity search - Function Transcriptional adaptor 2 / ADA2-like, zinc finger, ZZ-type / : / Transcriptional adapter 2-alpha-like domain / Histone acetyltransferase GCN5 / SWIRM domain / SWIRM domain / SWIRM domain profile. / SANT domain profile. / Zinc finger ZZ-type signature. ... Transcriptional adaptor 2 / ADA2-like, zinc finger, ZZ-type / : / Transcriptional adapter 2-alpha-like domain / Histone acetyltransferase GCN5 / SWIRM domain / SWIRM domain / SWIRM domain profile. / SANT domain profile. / Zinc finger ZZ-type signature. / SANT domain / Zinc-binding domain, present in Dystrophin, CREB-binding protein. / Zinc finger, ZZ type / Zinc finger, ZZ-type / Zinc finger, ZZ-type superfamily / Zinc finger ZZ-type profile. / Myb-like DNA-binding domain / Acetyltransferase (GNAT) family / Gcn5-related N-acetyltransferase (GNAT) domain profile. / SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains / SANT/Myb domain / GNAT domain / Acyl-CoA N-acyltransferase / Homeobox-like domain superfamily / Bromodomain, conserved site / Bromodomain signature. / Bromodomain / Bromodomain profile. / bromo domain / Bromodomain / Bromodomain-like superfamily / Winged helix-like DNA-binding domain superfamily / Immunoglobulins / Immunoglobulin-like / Sandwich / Mainly Beta Similarity search - Domain/homologyBiological species Homo sapiens (human)Saccharomyces cerevisiae S288c (yeast)Method X-RAY DIFFRACTION / SYNCHROTRON / MOLECULAR REPLACEMENT / Resolution : 1.98 Å DetailsAuthors Sun, J. / Paduch, M. / Kim, S.A. / Kramer, R.M. / Barrios, A.F. / Lu, V. / Luke, J. / Usatyuk, S. / Kossiakoff, A.A. / Tan, S. Funding support United States, 5items Details Hide detailsOrganization Grant number Country National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM088236 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM111651 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U01GM094588 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM072688 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U54HG006436 United States
CitationJournal : Proc. Natl. Acad. Sci. U.S.A. / Year : 2018Title : Structural basis for activation of SAGA histone acetyltransferase Gcn5 by partner subunit Ada2.Authors : Sun, J. / Paduch, M. / Kim, S.A. / Kramer, R.M. / Barrios, A.F. / Lu, V. / Luke, J. / Usatyuk, S. / Kossiakoff, A.A. / Tan, S. History Deposition Mar 29, 2018 Deposition site : RCSB / Processing site : RCSBRevision 1.0 Sep 19, 2018 Provider : repository / Type : Initial releaseRevision 1.1 Oct 3, 2018 Group : Data collection / Database references / Category : citationItem : _citation.country / _citation.journal_abbrev ... _citation.country / _citation.journal_abbrev / _citation.journal_id_ASTM / _citation.journal_id_CSD / _citation.journal_id_ISSN / _citation.pdbx_database_id_DOI / _citation.pdbx_database_id_PubMed / _citation.title / _citation.year Revision 1.2 Oct 10, 2018 Group : Data collection / Database references / Structure summaryCategory : citation / entityItem : _citation.journal_volume / _citation.page_first ... _citation.journal_volume / _citation.page_first / _citation.page_last / _entity.formula_weight Revision 1.3 Jan 1, 2020 Group : Author supporting evidence / Structure summary / Category : entity / pdbx_audit_supportItem : _entity.formula_weight / _pdbx_audit_support.funding_organizationRevision 1.4 Mar 4, 2020 Group : Derived calculationsCategory : pdbx_struct_assembly / pdbx_struct_assembly_gen / pdbx_struct_assembly_propRevision 1.5 Nov 20, 2024 Group : Data collection / Database references / Structure summaryCategory : chem_comp_atom / chem_comp_bond ... chem_comp_atom / chem_comp_bond / database_2 / pdbx_entry_details / pdbx_modification_feature Item : _database_2.pdbx_DOI / _database_2.pdbx_database_accession
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