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Open data
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Basic information
Entry | Database: PDB / ID: 1h9h | ||||||
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Title | COMPLEX OF EETI-II WITH PORCINE TRYPSIN | ||||||
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![]() | HYDROLASE INHIBITOR / COMPLEX (SERINE PROTEASE-INHIBITOR) / TRYPSIN / SQUASH INHIBITOR / CYSTINE KNOT / HYDROLASE | ||||||
Function / homology | ![]() trypsin / digestion / serine-type endopeptidase inhibitor activity / serine-type endopeptidase activity / proteolysis / extracellular space / extracellular region / metal ion binding Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Kraetzner, R. / Wentzel, A. / Kolmar, H. / Uson, I. | ||||||
![]() | ![]() Title: Structure of Ecballium Elaterium Trypsin Inhibitor II (Eeti-II): A Rigid Molecular Scaffold Authors: Kraetzner, R. / Debreczeni, J.E. / Pape, T. / Schneider, T.R. / Wentzel, A. / Kolmar, H. / Sheldrick, G.M. / Uson, I. #1: Journal: J.Biol.Chem. / Year: 1999 Title: Sequence Requirements of the Gpng Beta-Turn of the Ecballium Elaterium Trypsin Inhibitor II Explored by Combinatorial Library Screening Authors: Wentzel, A. / Christmann, A. / Kraetzner, R. / Kolmar, H. #2: Journal: Biochemistry / Year: 1999 Title: Min-21 and Min-23, the Smallest Peptides that Fold Like a Cystine-Stabilized Beta-Sheet Motif: Design, Solution Structure, and Thermal Stability Authors: Heitz, A. / Le-Nguyen, D. / Chiche, L. #3: ![]() Title: Use of Restrained Molecular Dynamics in Water to Determine Three-Dimensional Protein Structure: Prediction of the Three-Dimensional Structure of Ecballium Elaterium Trypsin Inhibitor II Authors: Chiche, L. / Gaboriaud, C. / Heitz, A. / Mornon, J.P. / Castro, B. / Kollman, P.A. | ||||||
History |
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Remark 700 | SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "B" IN EACH CHAIN ON SHEET RECORDS BELOW ... SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "B" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 67.9 KB | Display | ![]() |
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PDB format | ![]() | 49.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 423.6 KB | Display | ![]() |
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Full document | ![]() | 424.7 KB | Display | |
Data in XML | ![]() | 13.6 KB | Display | |
Data in CIF | ![]() | 19.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 1h9iC ![]() 1w7zC ![]() 1ldtS S: Starting model for refinement C: citing same article ( |
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Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: Protein | Mass: 23493.496 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: SIGMA / Source: (natural) ![]() ![]() |
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#2: Protein/peptide | Mass: 3902.500 Da / Num. of mol.: 1 / Mutation: YES / Source method: obtained synthetically / Details: C-TERMINAL TAG OF 6 HISTIDINES / Source: (synth.) ![]() |
#3: Chemical | ChemComp-CA / |
#4: Water | ChemComp-HOH / |
Compound details | ENGINEERED MUTATION MET 7 ILE IN CHAIN I DUE TO RADIATION DAMAGE CYSTEINES WERE MODELLED PARTLY ...ENGINEERED |
Sequence details | THE MICROHETEROGENEITY FOR THE CYSTEINE/SERINES AT RESIDUES 22,42,58, 136, 157, 191, 201, 220 ...THE MICROHETER |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.7 Å3/Da / Density % sol: 51 % |
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Crystal grow | pH: 6.7 / Details: pH 6.70 |
-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: MARRESEARCH / Detector: CCD / Date: Apr 4, 1999 / Details: TOROIDAL MIRROR |
Radiation | Monochromator: DIAMOND (111), GE(220) / Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9326 Å / Relative weight: 1 |
Reflection | Resolution: 1.5→20 Å / Num. obs: 49533 / % possible obs: 99.7 % / Redundancy: 8.05 % / Rmerge(I) obs: 0.0532 / Rsym value: 0.0278 / Net I/σ(I): 19.24 |
Reflection shell | Resolution: 1.5→1.6 Å / Redundancy: 4.48 % / Rmerge(I) obs: 0.3755 / Mean I/σ(I) obs: 3.39 / Rsym value: 0.2779 / % possible all: 99.6 |
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Processing
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Refinement | Method to determine structure: ![]() Starting model: PDB ENTRY 1LDT Resolution: 1.5→10 Å / Num. parameters: 8170 / Num. restraintsaints: 7778 / Cross valid method: FREE R-VALUE / σ(F): 0 / Stereochemistry target values: ENGH AND HUBER
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Solvent computation | Solvent model: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-2 | |||||||||||||||||||||||||||||||||
Refine analyze | Num. disordered residues: 17 / Occupancy sum hydrogen: 1746.9 / Occupancy sum non hydrogen: 1994.85 | |||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 1.5→10 Å
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Refine LS restraints |
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