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Structure paper
Title
Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
PDB-4ln5: Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (Bamb_6123), TARGET EFI-510059, with bound glycerol and chloride ion Method: X-RAY DIFFRACTION / Resolution: 2.1 Å
PDB-4mco: Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), target EFI-510211, with bound malonate Method: X-RAY DIFFRACTION / Resolution: 1.6 Å
PDB-4mev: Crystal structure of a TRAP periplasmic solute binding protein from Rhodoferax ferrireducens (Rfer_1840), Target EFI-510211, with bound malonate, space group I422 Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4mhf: Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Glucuronate, space group P21 Method: X-RAY DIFFRACTION / Resolution: 1.46 Å
PDB-4mij: Crystal structure of a Trap periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_3107), target EFI-510173, with bound alpha/beta D-Galacturonate, space group P21 Method: X-RAY DIFFRACTION / Resolution: 1.1 Å
PDB-4mnc: Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P21 Method: X-RAY DIFFRACTION / Resolution: 1.05 Å
PDB-4mni: Crystal structure of a TRAP periplasmic solute binding protein from Polaromonas sp. JS666 (Bpro_4736), Target EFI-510156, with bound benzoyl formate, space group P6522 Method: X-RAY DIFFRACTION / Resolution: 1.9 Å
PDB-4mx6: Crystal structure of a trap periplasmic solute binding protein from shewanella oneidensis (SO_3134), target EFI-510275, with bound succinate Method: X-RAY DIFFRACTION / Resolution: 1.1 Å
PDB-4n15: Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, with bound beta-D-glucuronate Method: X-RAY DIFFRACTION / Resolution: 1.651 Å
PDB-4n17: Crystal structure of a TRAP periplasmic solute binding protein from Burkholderia ambifaria (BAM_6123), Target EFI-510059, With bound beta-D-galacturonate Method: X-RAY DIFFRACTION / Resolution: 1.501 Å
PDB-4n4u: Crystal structure of ABC transporter solute binding protein BB0719 from Bordetella bronchiseptica RB50, TARGET EFI-510049 Method: X-RAY DIFFRACTION / Resolution: 1.57 Å
PDB-4n6d: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638 (Desal_3247), Target EFI-510112, phased with I3C, open complex, C-terminus of symmetry mate bound in ligand binding site Method: X-RAY DIFFRACTION / Resolution: 1.701 Å
PDB-4n6k: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638, Target EFI-510113 (Desal_0342), complex with diglycerolphosphate Method: X-RAY DIFFRACTION / Resolution: 1.2 Å
PDB-4n8g: Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0660), Target EFI-501075, with bound D-alanine-D-alanine Method: X-RAY DIFFRACTION / Resolution: 1.502 Å
PDB-4n8y: Crystal structure of a trap periplasmic solute binding protein from bradyrhizobium sp. btai1 b (bbta_0128), target EFI-510056 (bbta_0128), complex with alpha/beta-d-galacturonate Method: X-RAY DIFFRACTION / Resolution: 1.5 Å
PDB-4n91: Crystal structure of a trap periplasmic solute binding protein from anaerococcus prevotii dsm 20548 (Apre_1383), target EFI-510023, with bound alpha/beta d-glucuronate Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4nap: Crystal structure of a trap periplasmic solute binding protein from Desulfovibrio alaskensis G20 (DDE_0634), target EFI-510102, with bound d-tryptophan Method: X-RAY DIFFRACTION / Resolution: 2.3 Å
PDB-4nf0: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOMONAS AERUGINOSA PAO1 (PA4616), TARGET EFI-510182, WITH BOUND L-Malate Method: X-RAY DIFFRACTION / Resolution: 1.85 Å
PDB-4ng7: Crystal structure of a TRAP periplasmic solute binding protein from Citrobacter koseri (CKO_04899), Target EFI-510094, apo, open structure Method: X-RAY DIFFRACTION / Resolution: 2.3 Å
PDB-4ngu: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio alaskensis G20 (Dde_1548), Target EFI-510103, with bound D-Ala-D-Ala Method: X-RAY DIFFRACTION / Resolution: 2.5 Å
PDB-4nhb: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio desulfuricans (Ddes_1525), Target EFI-510107, with bound sn-glycerol-3-phosphate Method: X-RAY DIFFRACTION / Resolution: 1.902 Å
PDB-4nn3: Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens (Desal_2161), Target EFI-510109, with bound orotic acid Method: X-RAY DIFFRACTION / Resolution: 1.4 Å
PDB-4nq8: Crystal structure of a trap periplasmic solute binding protein from Bordetella bronchispeptica (bb3421), target EFI-510039, with density modeled as pantoate Method: X-RAY DIFFRACTION / Resolution: 1.5 Å
PDB-4nx1: Crystal structure of a trap periplasmic solute binding protein from Sulfitobacter sp. nas-14.1, target EFI-510292, with bound alpha-D-taluronate Method: X-RAY DIFFRACTION / Resolution: 1.6 Å
PDB-4o7m: Crystal structure of a trap periplasmic solute binding protein from shewanella loihica PV-4, target EFI-510273, with bound L-malate Method: X-RAY DIFFRACTION / Resolution: 1.5 Å
PDB-4o8m: Crystal structure of a trap periplasmic solute binding protein actinobacillus succinogenes 130z, target EFI-510004, with bound L-galactonate Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4o94: Crystal structure of a trap periplasmic solute binding protein from Rhodopseudomonas palustris HaA2 (RPB_3329), Target EFI-510223, with bound succinate Method: X-RAY DIFFRACTION / Resolution: 2 Å
PDB-4oa4: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SHEWANELLA LOIHICA PV-4 (Shew_1446), TARGET EFI-510273, WITH BOUND SUCCINATE Method: X-RAY DIFFRACTION / Resolution: 1.6 Å
PDB-4oan: Crystal structure of a TRAP periplasmic solute binding protein from rhodopseudomonas palustris HaA2 (RPB_2686), TARGET EFI-510221, with density modeled as (S)-2-hydroxy-2-methyl-3-oxobutanoate ((S)-2-Acetolactate) Method: X-RAY DIFFRACTION / Resolution: 1.35 Å
PDB-4ovp: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SULFITOBACTER sp. NAS-14.1, TARGET EFI-510292, WITH BOUND ALPHA-D-MANURONATE Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4ovq: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS, TARGET EFI-510230, WITH BOUND BETA-D-GLUCURONATE Method: X-RAY DIFFRACTION / Resolution: 1.501 Å
PDB-4ovr: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM XANTHOBACTER AUTOTROPHICUS PY2, TARGET EFI-510329, WITH BOUND BETA-D-GALACTURONATE Method: X-RAY DIFFRACTION / Resolution: 1.65 Å
PDB-4ovs: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SULFUROSPIRILLUM DELEYIANUM DSM 6946 (Sdel_0447), TARGET EFI-510309, WITH BOUND SUCCINATE Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4ovt: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTERIUM ANTHROPI (Oant_3902), TARGET EFI-510153, WITH BOUND L-FUCONATE Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4p1e: Crystal structure of a trap periplasmic solute binding protein from escherichia fergusonii (efer_1530), target EFI-510119, apo open structure, phased with iodide Method: X-RAY DIFFRACTION / Resolution: 1.9 Å
PDB-4p1l: Crystal structure of a trap periplasmic solute binding protein from chromohalobacter salexigens dsm 3043 (csal_2479), target EFI-510085, with bound d-glucuronate, spg i213 Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4p3l: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM CHROMOHALOBACTER SALEXIGENS DSM 3043 (Csal_2479), TARGET EFI-510085, WITH BOUND GLUCURONATE, SPG P6122 Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4p47: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM OCHROBACTRUM ANTHROPI (Oant_4429), TARGET EFI-510151, C-TERMIUS BOUND IN LIGAND BINDING POCKET Method: X-RAY DIFFRACTION / Resolution: 1.3 Å
PDB-4p56: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM BORDETELLA BRONCHISEPTICA, TARGET EFI-510038 (BB2442), WITH BOUND (R)-MANDELATE and (S)-MANDELATE Method: X-RAY DIFFRACTION / Resolution: 1.9 Å
PDB-4p8b: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RALSTONIA EUTROPHA H16 (H16_A1328), TARGET EFI-510189, WITH BOUND (S)-2-hydroxy-2-methyl-3-oxobutanoate ((S)-2-Acetolactate) Method: X-RAY DIFFRACTION / Resolution: 1.3 Å
PDB-4p9k: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM VERMINEPHROBACTER EISENIAE EF01-2 (Veis_3954, TARGET EFI-510324) A NEPHRIDIAL SYMBIONT OF THE EARTHWORM EISENIA FOETIDA, BOUND TO D-ERYTHRONATE WITH RESIDUAL DENSITY SUGGESTIVE OF SUPERPOSITION WITH COPURIFIED ALTERNATIVE LIGAND. Method: X-RAY DIFFRACTION / Resolution: 1.4 Å
PDB-4paf: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3,4-DIHYDROXYBENZOATE Method: X-RAY DIFFRACTION / Resolution: 1.6 Å
PDB-4pai: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3-HYDROXYBENZOATE Method: X-RAY DIFFRACTION / Resolution: 1.4 Å
PDB-4pak: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM VERMINEPHROBACTER EISENIAE EF01-2 (Veis_3954, TARGET EFI-510324) A NEPHRIDIAL SYMBIONT OF THE EARTHWORM EISENIA FOETIDA, BOUND TO (R)-PANTOIC ACID Method: X-RAY DIFFRACTION / Resolution: 1.2 Å
PDB-4pbh: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID Method: X-RAY DIFFRACTION / Resolution: 1.2 Å
PDB-4pbq: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM HAEMOPHILUS INFLUENZAE RdAW (HICG_00826, TARGET EFI-510123) WITH BOUND L-GULONATE Method: X-RAY DIFFRACTION / Resolution: 1.65 Å
PDB-4pc9: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSENBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND D-MANNONATE Method: X-RAY DIFFRACTION / Resolution: 1.3 Å
PDB-4pcd: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS OCh 114 (RD1_1052, TARGET EFI-510238) WITH BOUND L-GALACTONATE Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4pdd: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (Bpro_0088, TARGET EFI-510167) BOUND TO D-ERYTHRONATE Method: X-RAY DIFFRACTION / Resolution: 1.7 Å
PDB-4pdh: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM POLAROMONAS SP JS666 (Bpro_1871, TARGET EFI-510164) BOUND TO D-ERYTHRONATE Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4pe3: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RHODOBACTER SPHAEROIDES (Rsph17029_3620, TARGET EFI-510199), APO OPEN STRUCTURE Method: X-RAY DIFFRACTION / Resolution: 1.35 Å
PDB-4pet: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM COLWELLIA PSYCHRERYTHRAEA (CPS_0129, TARGET EFI-510097) WITH BOUND CALCIUM AND PYRUVATE Method: X-RAY DIFFRACTION / Resolution: 1.9 Å
PDB-4pf6: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS (RD1_0742, TARGET EFI-510239) WITH BOUND 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID (KDO) Method: X-RAY DIFFRACTION / Resolution: 1.75 Å
PDB-4pf8: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM SULFITOBACTER sp. NAS-14.1 (TARGET EFI-510299) WITH BOUND BETA-D-GALACTURONATE Method: X-RAY DIFFRACTION / Resolution: 1.5 Å
PDB-4pfb: Crystal structure of a TRAP periplasmic solute binding protein from Fusobacterium nucleatun (FN1258, TARGET EFI-510120) with bound SN-glycerol-3-phosphate Method: X-RAY DIFFRACTION / Resolution: 2.7 Å
PDB-4pfi: Crystal structure of a tRAP periplasmic solute binding protein from marinobacter aquaeolei VT8 (Maqu_2829, TARGET EFI-510133), apo open structure Method: X-RAY DIFFRACTION / Resolution: 2.3024 Å
PDB-4pfr: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RHODOBACTER SPHAEROIDES (Rsph17029_3541, TARGET EFI-510203), APO OPEN PARTIALLY DISORDERED Method: X-RAY DIFFRACTION / Resolution: 2.6 Å
PDB-4pgn: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO ALASKENSIS G20 (Dde_0634, TARGET EFI-510120) WITH BOUND INDOLE PYRUVATE Method: X-RAY DIFFRACTION / Resolution: 1.8 Å
PDB-4pgp: CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO ALASKENSIS G20 (Dde_0634, TARGET EFI-510120) WITH BOUND 3-INDOLE ACETIC ACID Method: X-RAY DIFFRACTION / Resolution: 2.25 Å
PDB-4uab: Crystal structure of a TRAP periplasmic solute binding protein from Chromohalobacter salexigens DSM 3043 (Csal_0678), Target EFI-501078, with bound ethanolamine Method: X-RAY DIFFRACTION / Resolution: 1.4 Å
TRANSPORT PROTEIN / ENZYME FUNCTION INITIATIVE / EFI / Structural Genomics / TRAP periplasmic solute binding family / ABC PERIPLASMIC SOLUTE BINDING FAMILY / PROTEIN TRANSPORT / PROTEIN BINDING / MEMBRANE PROTEIN/PROTEIN TRANSPORT / MEMBRANE PROTEIN-PROTEIN TRANSPORT complex / SOLUTE-BINDING PROTEIN
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Keywords
burkholderia ambifaria (bacteria)
pseudomonas aeruginosa (bacteria)
escherichia fergusonii (bacteria)