[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

-
Search query

Keywords
Structure methods
Author
Journal
IF

-
List of structure papers

Showing 1 - 20 of 113,577 items (all data)

-
Cryo-EM structure of the human glucose transporter GLUT7.

-
Identification of a novel neutralization epitope in rhesus AAVs.

-
Serendipitous High-Resolution Structure of Escherichia coli Carbonic Anhydrase 2

-
pT=3 virus like particle of ssRNA phage Hubei14

To Be Published,
Kalnins G
Methods: EM (single particle)

-
pT=3 particle of ssRNA phage ESE017 coat protein

To Be Published,
Kalnins G
Methods: EM (single particle)

-
pT=3 virus like particle of ssRNA phage ESO003

To Be Published,
Kalnins G
Methods: EM (single particle)

-
pT=3 virus like particle of ssRNA phage Beihai26

To Be Published,
Kalnins G
Methods: EM (single particle)

-
Hemifusomes and Interacting Proteolipid Nanodroplets: Formation of a Novel Cellular Organelle Complex

-
Multiple roles for TFG ring complexes in neuronal cargo trafficking

-
Structure of the CUL1-RBX1-SKP1-FBXO4 SCF ubiquitin ligase complex.

-
Structure of an Archaeal Ribosome with a Divergent Active Site

-
Homodimer of cystatohinine beta lyase PatB/PLP/L-(+)-alliin complex from Bacillus cereus(NCBI Reference Sequence: WP_001974105.1)

To Be Published,
Liu, Y. / Yang, C.
Methods: X-ray diffraction

-
Room-temperature structure of lysozyme determined by serial synchrotron crystallography (MOSFLM)

To Be Published,
Nam, K.H.
Methods: X-ray diffraction

-
Room-temperature structure of lysozyme determined by serial synchrotron crystallography (XGANDALF)

To Be Published,
Nam, K.H.
Methods: X-ray diffraction

-
Crystal structure of Plasmoredoxin, a disulfide oxidoreductase from Plasmodium falciparum

To Be Published,
Panicker, L.
Methods: X-ray diffraction

-
Nucleosome flipping drives kinetic proofreading and processivity by SWR1.

-
Facile Bacterial Production of Human Vacuolar Protein Sorting 34 Enables Structural Characterization of Novel Inhibitors

-
Crystal structure of CcGH131B, a protein belonging to glycoside hydrolase family 131 from the basidiomycete Coprinopsis cinerea

-
Hypoxanthine-guanine phosphoribosyltransferase from E. coli with HEPES

-
Structures of complete extracellular assemblies of type I and type II Oncostatin M receptor complexes.

Pages:

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more