[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,216 items for (author: yue & w)

EMDB-75101:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

PDB-10dw:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66504:
Phage T4 neck in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66505:
Phage T4 sheath in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66506:
Phage T4 inner baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66507:
Phage T4 peripheral baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66508:
Phage T4 tip of the tail tube in post-tail-contraction state (genome-empty particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-66675:
Phage T4 protruding part of the tail tube in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3o:
Phage T4 neck in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3p:
Phage T4 sheath in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3q:
Phage T4 inner baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3r:
Phage T4 peripheral baseplate in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9x3s:
Phage T4 tip of the tail tube in post-tail-contraction state (genome-empty particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

PDB-9xa3:
Phage T4 protruding part of the tail tube in post-tail-contraction state (genome-full particle)
Method: single particle / : Shao Q, Dong J, Wang A, Hu H, Yue J, Li H, Li Y, Zhang Q, Liu J, Sun L, Fokine A, Rao VB, Tao P, Fang Q

EMDB-67024:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue (patient 2).
Method: helical / : Ma BY, Yao YX, Li D, Liu C

EMDB-67025:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue (patient 3).
Method: helical / : Ma BY, Yao YX, Li D, Liu C

PDB-9xmg:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue (patient 2).
Method: helical / : Ma BY, Yao YX, Li D, Liu C

PDB-9xmi:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue (patient 3).
Method: helical / : Ma BY, Yao YX, Li D, Liu C

EMDB-71265:
Cryo-EM structure of Nectin-2 complex with Fab F1
Method: single particle / : Yueyue YW

PDB-9p4f:
Cryo-EM structure of Nectin-2 complex with Fab F1
Method: single particle / : Yueyue YW

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-65344:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue.
Method: helical / : Ma BY, Yao YX, Li D, Liu C

EMDB-65345:
Cryo-EM structure of Congo Red-bound ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissu
Method: helical / : Ma BY, Yao YX, Li D, Liu C

EMDB-65346:
Cryo-EM structure of ThS-bound ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue.
Method: helical / : Ma BY, Yao YX, Li D, Liu C

PDB-9vtw:
Cryo-EM structure of ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue.
Method: helical / : Ma BY, Yao YX, Li D, Liu C

PDB-9vtx:
Cryo-EM structure of Congo Red-bound ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissu
Method: helical / : Ma BY, Yao YX, Li D, Liu C

PDB-9vty:
Cryo-EM structure of ThS-bound ATTRA97S amyloid fibrils extracted from patient-derived abdominal adipose biopsy tissue.
Method: helical / : Ma BY, Yao YX, Li D, Liu C

EMDB-80106:
Cryo-EM structure of the Helicobacter pylori ferritin-I69C
Method: single particle / : Wang N, Liu Y, Shan J, Rao H, Ma X, Li Y

PDB-25ho:
Cryo-EM structure of the Helicobacter pylori ferritin-I69C
Method: single particle / : Wang N, Liu Y, Shan J, Rao H, Ma X, Li Y

EMDB-69132:
Cryo-EM structure of the Retron-Eco8-SSB complex
Method: single particle / : Zhang JT, Ji CG, Li ZL, Wei XY, Jia N

PDB-23or:
Cryo-EM structure of the Retron-Eco8-SSB complex
Method: single particle / : Zhang JT, Ji CG, Li ZL, Wei XY, Jia N

EMDB-69803:
Cryo-EM structure of the ligand-free (Apo) GHRHR-Gs complex
Method: single particle / : Wang MW, Hang KN, Qiu Y, Chen XY, Chen YY, Cong ZT, Zhou QT

EMDB-69804:
Cryo-EM structure of the PCO371-bound GHRHR-Gs complex
Method: single particle / : Wang MW, Hang KN, Qiu Y, Chen XY, Chen YY, Huang ST, Cong ZT, Zhou QT

PDB-24tb:
Cryo-EM structure of the ligand-free (Apo) GHRHR-Gs complex
Method: single particle / : Wang MW, Hang KN, Qiu Y, Chen XY, Chen YY, Cong ZT, Zhou QT

PDB-24ti:
Cryo-EM structure of the PCO371-bound GHRHR-Gs complex
Method: single particle / : Wang MW, Hang KN, Qiu Y, Chen XY, Chen YY, Huang ST, Cong ZT, Zhou QT

EMDB-65314:
EBOV GP/BA2-VHH complex
Method: single particle / : Wang M, Gao Y, Jin T

EMDB-65343:
EBOV GP/1A10-VHH complex
Method: single particle / : Wang M, Gong P, Jin T

PDB-9vt4:
EBOV GP/BA2-VHH complex
Method: single particle / : Wang M, Gao Y, Jin T

PDB-9vts:
EBOV GP/1A10-VHH complex
Method: single particle / : Wang M, Gong P, Jin T

EMDB-66101:
The cryo-electron microscopy complex structure of PCV3 VLPs and antibody 2B5
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

EMDB-66102:
Cryo-EM structure of PCV3 VLPs
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

PDB-9wmq:
The cryo-electron microscopy complex structure of PCV3 VLPs and antibody 2B5
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

PDB-9wmr:
Cryo-EM structure of PCV3 VLPs
Method: single particle / : Su J, Jiang Y, Li S, Zheng Q

EMDB-62954:
Cryo-EM structure of the Retron-Eco8 complex
Method: single particle / : Zhang JT, Ji CG, Jia N

EMDB-66110:
Cryo-EM structure of the Retron-Eco8 complex in the presence of ATP
Method: single particle / : Zhang JT, Ji CG, Jia N

PDB-9lbq:
Cryo-EM structure of the Retron-Eco8 complex
Method: single particle / : Zhang JT, Ji CG, Jia N

PDB-9wn8:
Cryo-EM structure of the Retron-Eco8 complex in the presence of ATP
Method: single particle / : Zhang JT, Ji CG, Jia N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more