[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 227 items for (author: ye & md)

EMDB-72825:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72826:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72827:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72828:
receptor focused refinement of human delta opioid receptor complex with mini-Gi and DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72829:
receptor focused refinement of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72830:
receptor focused refinement of human delta opioid receptor complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72831:
conensus map of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72832:
receptor focused refinement of human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-52596:
Initial respirasome complex map (consensus map)
Method: single particle / : Nguyen MD, Rorbach J

EMDB-52612:
Complex IV with HIGD2A density and incoming NDUFA4 (class 2)
Method: single particle / : Nguyen MD, Rorbach J

EMDB-52613:
NDUFA4 bound complex IV with weak density from HIGD2A
Method: single particle / : Nguyen MD, Rorbach J

EMDB-52654:
Cryo-EM structure of HIGD2A bound complex IV
Method: single particle / : Nguyen MD, Rorbach J, Singh V

EMDB-52662:
Cryo-EM structure of NDUFA4 bound complex IV within the respirasome complex
Method: single particle / : Nguyen MD, Singh V, Rorbach J

EMDB-52664:
Local refinement of complex IV (whole map)
Method: single particle / : Nguyen MD, Rorbach J

EMDB-54784:
local refinement map of human complex I
Method: single particle / : Nguyen MD, Rorbach J

EMDB-52525:
High resolution cryo-EM structure of human complex III in mitochondria
Method: single particle / : Nguyen MD, Khajawa A, Rorbach J

EMDB-52619:
High resolution Cryo-EM structure of human complex I in mitochondria
Method: single particle / : Nguyen MD, Singh V, Rorbach J

EMDB-46479:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46481:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46482:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46487:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46495:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46496:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-39097:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-39103:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-60598:
Structure of CTF18-PCNA with ATP and Mg2+
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

PDB-9iin:
Structure of CTF18-PCNA with ATP and Mg2+
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

EMDB-60534:
Structure of CTF18-PCNA with ATP
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

PDB-8zwo:
Structure of CTF18-PCNA with ATP
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

EMDB-19460:
Human mitochondrial ribosome in complex with antibiotic tigecycline
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19490:
Human mitoribosome Class P-tRNA, mtSSU head (local filter) with tigecycline
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19491:
Human mitoribosome Class P-tRNA, mtLSU body (local filter) with tigecycline bound to mtLSU site-1 and 2
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19493:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class P-tRNA consensus.
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19526:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class A-tRNA P-tRNA consensus.
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19539:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class A-tRNA P-tRNA mtSSU head (local-filter).
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19542:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class A-tRNA P-tRNA mtLSU body (local-filter).
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19544:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class empty consensus (local-filter)
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19545:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class empty mtSSU head (local-filter)
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-19546:
Human mitochondrial ribosome in complex with antibiotic tigecycline, Class empty mtLSU body (local-filter)
Method: single particle / : Khawaja A, Nguyen MD, Singh V, Rorbach J

EMDB-43648:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43649:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43652:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43653:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map receptor
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43654:
Kappa opioid receptor:Galphai protein in complex with inverse agonist GB18, Original map G protein
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43556:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43557:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-43558:
Kappa opioid receptor in complex with heterotrimerig Gi protein, bound to inverse agonist GB18
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

EMDB-46585:
Kappa opioid receptor:Galphai protein in complex with inverse agonist JDTic , no scFv16
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

PDB-8vve:
Kappa opioid receptor:Galphai protein in complex with inverse agonist norBNI
Method: single particle / : Gati C, Motiwala Z, Tyson AS, Styrpejko D, Han GW, Khan S, Ramos-Gonzalez N, Shenvi R, Majumdar S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more