[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 283 items for (author: ye & md)

EMDB-73703:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73704:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73705:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-73707:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex (RECC), tRNA focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-70641:
Monomeric ADAR2_E488Q bound to dsRNA sequence derived from human GLI1 gene
Method: single particle / : Matthews MM, Wolf M

EMDB-73392:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

EMDB-73457:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

PDB-9ysg:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody AB2-122 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Jonaid G, Batra H, Kibria G, Chen B, Alt FW

PDB-9ytc:
Cryo-EM structure of SARS-CoV-2 Omicron neutralizing antibody S212 with BA.5 RBD and SP1-77 Fab complex
Method: single particle / : Batra H, Zhang J, Jonaid G, Kibria G, Chen B, Alt FW

EMDB-73706:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2), composite map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

PDB-9z0h:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 2, U-insertion (RECC2)
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-66444:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66445:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66446:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66447:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66448:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66449:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-49451:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49456:
Cryo-EM structure of the Class 2 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49455:
Cryo-EM structure of the Class 3 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49460:
Cryo-EM structure of the PI3K alpha/KRas complex on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49452:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex dimer on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49453:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex on POPC/POPS/PIP2 nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49454:
Cryo-EM structure of the Class 1 PI3K alpha/KRas complex on POPC/POPS nanodiscs
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49458:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex dimer on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49459:
Cryo-EM structure of the PI3K alpha/KRas/HER3 phosphopeptide complex on POPC/POPS/PIP2 nanodiscs low-pass filtered to 5 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-49519:
Cryo-EM structure of the Class 1 PI3K alpha/KRas complex on POPC/POPS nanodiscs low-pass filtered to 10 angstroms
Method: single particle / : Torosyan H, Natalia J, Verba KA

EMDB-74399:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

EMDB-71896:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-71897:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-71898:
Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-64935:
Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Method: single particle / : Nguyen VHT, Chen X, Liu YM, Ma C

EMDB-64936:
Lectin FRIL from Lablab purpureus with self glycan
Method: single particle / : Nguyen VHT, Liu YM, Chen X, Ma C

EMDB-64937:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

EMDB-64938:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

PDB-9vbx:
Lectin FRIL from Lablab purpureus complexed to Lewis X tetrasaccharide
Method: single particle / : Nguyen VHT, Chen X, Liu YM, Ma C

PDB-9vby:
Lectin FRIL from Lablab purpureus with self glycan
Method: single particle / : Nguyen VHT, Liu YM, Chen X, Ma C

PDB-9vbz:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

PDB-9vc0:
Lectin FRIL from Lablab purpureus complexed to oligomannose
Method: single particle / : Nguyen VHT, Liu YM, Ma C

EMDB-64201:
Structure of CTF18-PCNA with ATP
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

PDB-9uiq:
Structure of CTF18-PCNA with ATP
Method: single particle / : Briola GR, Tehseen M, Al-Amodi A, Nguyen PQ, Savva CG, Hamdan SM, De Biasio A

EMDB-49897:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImI
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

EMDB-49898:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImII
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

EMDB-49899:
Muscle-type nicotinic acetylcholine receptor bound to conotoxin ImII
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

PDB-9nx0:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImI
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

PDB-9nx1:
Alpha7-nicotinic acetylcholine receptor bound to conotoxin ImII
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

PDB-9nx2:
Muscle-type nicotinic acetylcholine receptor bound to conotoxin ImII
Method: single particle / : Stowell MHB, Hibbs RE, Noviello CM, Bhattacharjee B

EMDB-46785:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), consensus map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46786:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), left wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

EMDB-46787:
Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1), right wing focused refinement map
Method: single particle / : Liu YT, Jih J, Zhou ZH, Aphasizhev R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more