[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 212 items for (author: yanyan & z)

EMDB-61131:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

PDB-9j4c:
Cryo-EM structure of aPlexinA1-19-43 Fab in complex with PlexinA1 dimer
Method: single particle / : Tian H, Fung CP

EMDB-66373:
The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Method: single particle / : Li XY, Mao ZY, Han GY

PDB-9wyp:
The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Method: single particle / : Li XY, Mao ZY, Han GY

EMDB-61420:
The complex structure of Y510-9709 and NET determined with Cryo-EM
Method: single particle / : Jia Y, Gao B, Tan J, Yan C, Zhang W, Lan Y, Xiao Y, Huang Y, Jin Y, Yuan Y, Tian J, Ma W, Zhang Y

EMDB-61426:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

PDB-9jel:
The complex structure of Y510-9709 and NET determined with Cryo-EM
Method: single particle / : Jia Y, Gao B, Tan J, Yan C, Zhang W, Lan Y

PDB-9jf3:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

EMDB-63458:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lws:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-47463:
Apo TRiC in closed conformation
Method: single particle / : Zhao Y, Chiu W

EMDB-47464:
TRiC encapsulating tubulin folding nucleus state.
Method: single particle / : Zhao Y, Chiu W

EMDB-47465:
Tubulin intermediate state I in human chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47466:
Tubulin intermediate state II in chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47467:
Tubulin intermediate III in chaperonin TRiC
Method: single particle / : Zhao Y, Chiu W

EMDB-47468:
Native Tubulin in human chaperonin TRIC
Method: single particle / : Zhao Y, Chiu W

PDB-9e2s:
Apo TRiC in closed conformation
Method: single particle / : Zhao Y, Chiu W

EMDB-63456:
Cryo-EM structure of PI3Kalpha in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-63457:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lwq:
Cryo-EM structure of PI3Kalpha in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

PDB-9lwr:
Cryo-EM structure of PI3Kalpha H1047R in complex with compound UCL-TRO-1938
Method: single particle / : Liu X, Zhou Q

EMDB-45793:
Closed state MmCpn under ATP/AlFx condition by subtomogram averaging
Method: subtomogram averaging / : Yanyan Z

EMDB-45794:
MmCpn in closed state wit D9 symmetry
Method: subtomogram averaging / : Yanyan Z

PDB-9cpk:
D8 symmetry reconstruction of MmCPn in closed state
Method: subtomogram averaging / : Yanyan Z

EMDB-37693:
Cryo-EM structure of the 10-subunits Mmp1 complex from Mycobacterium smegmatis
Method: single particle / : Zhang M, Tang Y, Gao Y, Liu X, Lan W, Liu Y, Ma M

PDB-8won:
Cryo-EM structure of the 10-subunits Mmp1 complex from Mycobacterium smegmatis
Method: single particle / : Zhang M, Tang Y, Gao Y, Liu X, Lan W, Liu Y, Ma M

EMDB-37691:
Cryo-EM structure of the Mmp1 encapasulin from Mycobacterium smegmatis
Method: single particle / : Zhang M, Tang Y, Gao Y, Liu X, Lan W, Liu Y, Ma M

EMDB-60569:
cryo-EM map of encapsulin Mmp1 with SufS
Method: single particle / : Zhang M, Tang Y, Gao Y, Liu X, Lan W, Liu Y, Ma M

PDB-8wol:
Cryo-EM structure of the Mmp1 encapasulin from Mycobacterium smegmatis
Method: single particle / : Zhang M, Tang Y, Gao Y, Liu X, Lan W, Liu Y, Ma M

EMDB-35603:
Cryo-EM structure of human HCN3 channel with cAMP
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

PDB-8io0:
Cryo-EM structure of human HCN3 channel with cAMP
Method: single particle / : Yu B, Lu QY, Li J, Zhang J

EMDB-38418:
A neutralizing nanobody VHH60 against wt SARS-CoV-2
Method: single particle / : Lu Y, Guo H, Ji X, Yang H

PDB-8xki:
A neutralizing nanobody VHH60 against wt SARS-CoV-2
Method: single particle / : Lu Y, Guo H, Ji X, Yang H

EMDB-37546:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

EMDB-37548:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

EMDB-37549:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

EMDB-37550:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

EMDB-38049:
SARS-CoV-2 JN.1 Spike
Method: single particle / : Yue C, Liu P

EMDB-38072:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

EMDB-38073:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (1 RBD up)
Method: single particle / : Yue C, Liu P

EMDB-38681:
BA.2.86 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

EMDB-38682:
JN.1 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P

EMDB-38683:
XBB.1.5 Spike Trimer in complex with heparan sulfate
Method: single particle / : Yue C, Liu P, Mao X

EMDB-38684:
BA.2.86-T356K Spike Trimer in complex with heparan sulfate (Local refinement)
Method: single particle / : Yue C, Liu P

PDB-8whs:
Spike Trimer of BA.2.86 in complex with one hACE2
Method: single particle / : Yue C, Liu P

PDB-8whu:
Spike Trimer of BA.2.86 in complex with two hACE2s
Method: single particle / : Yue C, Liu P

PDB-8whv:
Spike Trimer of BA.2.86 with three RBDs down
Method: single particle / : Yue C, Liu P

PDB-8whw:
Spike Trimer of BA.2.86 with single RBD up
Method: single particle / : Yue C, Liu P

PDB-8x4h:
SARS-CoV-2 JN.1 Spike
Method: single particle / : Yue C, Liu P

PDB-8x5q:
SARS-CoV-2 BA.2.75 Spike with K356T mutation (3 RBD down)
Method: single particle / : Yue C, Liu P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more