[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,322 items for (author: xie & p)

EMDB-76694:
Cryo-EM structure of SARS-CoV-2 BA.3.2.1 spike with K852A mutation, flexible conformation
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-76706:
Cryo-EM structure of SARS-CoV-2 BA.3.2.1 spike with N529Q mutation, flexible conformation
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-76713:
Local refinement of RBDA, RBDC, and NTDB of SARS-CoV-2 BA.3.2.1 spike with K852A mutation, closed conformation
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-76849:
Cryo-EM structure of SARS-CoV-2 BA.3.2.1 spike with K852A mutation, open conformation
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-76850:
Cryo-EM structure of SARS-CoV-2 BA.3.2.1 spike with N529Q mutation, open conformation
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-76936:
Local refinement of the RBD and NTD in the closed BA.3.2.1 spike with N529Q mutant
Method: single particle / : Wang Y, Hu Y, Xie X

EMDB-80883:
XEN1101 bound KCNQ2/3 heteromer co-expressed with CaM, 3:1 stoichiometry, state 1
Method: single particle / : Lu F, Fan X, Huang J

EMDB-80884:
XEN1101 bound KCNQ2/3 heteromer co-expressed with CaM, 3:1 stoichiometry, state 2
Method: single particle / : Lu F, Fan X, Huang J

EMDB-80885:
XEN1101 bound KCNQ2/3 heteromer co-expressed with CaM, 3:1 stoichiometry, state 3
Method: single particle / : Lu F, Fan X, Huang J

EMDB-80886:
XEN1101 bound KCNQ2/3 heteromer co-expressed with CaM, 3:1 stoichiometry, state 4
Method: single particle / : Lu F, Fan X, Huang J

EMDB-80887:
XEN1101 bound KCNQ2/3 heteromer co-expressed with CaM, 2:2 stoichiometry
Method: single particle / : Lu F, Fan X, Huang J

EMDB-64742:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2w:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with di-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-64679:
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Method: single particle / : Liu Q, Gui M, Wu JP, Zhou LN

PDB-9v10:
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Method: single particle / : Liu Q, Gui M, Wu JP, Zhou LN

EMDB-62782:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l36:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-73227:
Focused map of HBV with BAY41-4109
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73229:
Focused map of HBV Capsid with compound HAP12
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-73226:
HBV wildtype capsid with packaged E. coli RNA
Method: single particle / : Gibes NG, Wang JC-Y, Zlotnick A, Kumar S

EMDB-64741:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

PDB-9v2v:
Cryo-EM structure of the histone deacetylase complex Rpd3L in complex with mono-nucleosome
Method: single particle / : Zhao H, Li H, Wang C, Yang X, Li H, Zou B, Dong S, Zhang N, Zhou Y, Yi L, Zhang Y, Xie Y, Qin D, Chao W, Pei D, He J

EMDB-62778:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62780:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62861:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

PDB-9l2o:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l2t:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l6p:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-49941:
Cryo-EM structure of NVL bound the the MM927 inhibitor
Method: single particle / : Cruz VE, Erzberger JP

EMDB-61961:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 0U scaffold at 2.96 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61962:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 1U sacffold at 3.5 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61963:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 2U sacffold at 3.04 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61964:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 3U sacffold at 3.8 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61965:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 4U sacffold at 3.32 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61966:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 5U sacffold at 3.19 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61967:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 6U sacffold at 3.04 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61968:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 7U sacffold at 3.42 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-61969:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 8U sacffold at 4.06 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k11:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 0U scaffold at 2.96 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k12:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 1U sacffold at 3.5 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k13:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 2U sacffold at 3.04 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k14:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 3U sacffold at 3.8 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k15:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 4U sacffold at 3.32 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k16:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 5U sacffold at 3.19 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k17:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 6U sacffold at 3.04 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k18:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 7U sacffold at 3.42 Angstrom
Method: single particle / : Xie G, Du X, Du J

PDB-9k19:
A cryo-EM structure of B. oleracea RNA polymerase V in complex with 8U sacffold at 4.06 Angstrom
Method: single particle / : Xie G, Du X, Du J

EMDB-64082:
Cryo-EM structure of human TRPV3 in complex with sevoflurane determined in MSP2N2 nanodisc
Method: single particle / : Lu X, Yao J

PDB-9ued:
Cryo-EM structure of human TRPV3 in complex with sevoflurane determined in MSP2N2 nanodisc
Method: single particle / : Lu X, Yao J

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more