[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 607 items for (author: xia & ly)

EMDB-43623:
Human PRC2 - AavLEA1 (1:12 molar ratio)
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-42524:
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Method: single particle / : Huynh KW, Chang JS, Fennell KF, Che Y, Wu H

PDB-8usz:
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Method: single particle / : Huynh KW, Chang JS, Fennell KF, Che Y, Wu H

EMDB-50587:
TMEM106B filaments from Biondi bodies (Biondi variant)
Method: helical / : Ghetti B, Schweighauser M, Jacobsen MH, Gray D, Bacioglu M, Murzin AG, Glazier BS, Vidal R, Newell KL, Gao S, Garringer HJ, Spillantini MG, Scheres SHW, Goedert M

PDB-9fnb:
TMEM106B filaments from Biondi bodies (Biondi variant)
Method: helical / : Ghetti B, Schweighauser M, Jacobsen MH, Gray D, Bacioglu M, Murzin AG, Glazier BS, Vidal R, Newell KL, Gao S, Garringer HJ, Spillantini MG, Scheres SHW, Goedert M

EMDB-61290:
Cryo-EM structure of Tdk1-Bdf1 complex
Method: single particle / : Zhang J, Ye K

PDB-9ja5:
Cryo-EM structure of Tdk1-Bdf1 complex
Method: single particle / : Zhang J, Ye K

EMDB-46612:
Subtomogram average of the ribonucleoprotein of the rabies virus CVS-27 strain
Method: subtomogram averaging / : Zhou ZH, Cai X, Zhou K, Alvarez-Cabrera AL, Si Z, Wang H, He Y, Li C

EMDB-46621:
CryoEM density map of partial Rabies Virus nucleocapsid
Method: helical / : Zhou ZH, Cai X, Zhou K, Alvarez-Cabrera AL, Si Z, Wang H, He Y, Li C

EMDB-46533:
Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-46534:
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Method: single particle / : Wasilko DJ, Wu H

PDB-9d3e:
Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9d3g:
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Method: single particle / : Wasilko DJ, Wu H

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-43619:
Human DNA polymerase alpha/primase - AavLEA1 (1:8 molar ratio)
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim C

EMDB-43620:
Human PRC2 - AavLEA1 (1:40 molar ratio)
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-43621:
Human PRC2 - RvLEAM(short) (1:6 molar ratio)
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim C

EMDB-43622:
Human PRC2 - RvLEAM(short) (1:6 molar ratio), 10 mM MgCl2
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-43625:
Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-43626:
Human DNA polymerase alpha/primase - RvLEAM(short) (1:6 molar ratio)
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-43627:
Human DNA polymerase alpha/primase - 4 mM CHAPSO
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim C

EMDB-43628:
Human DNA polymerase alpha/primase - AavLEA1 (1:40 molar ratio)
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

EMDB-45273:
Human PRC2 - cross-linked 10 min
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim CJ

PDB-8vy3:
Human DNA polymerase alpha/primase - AavLEA1 (1:40 molar ratio)
Method: single particle / : Abe KM, Li G, Grant T, Lim CJ

PDB-9c8u:
Human PRC2 - RvLEAM (short) (1:6 molar ratio), cross-linked 10 min
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim C

PDB-9c8v:
Human DNA polymerase alpha/primase - CHAPSO (4 mM)
Method: single particle / : Abe KM, Li G, He Q, Grant T, Lim C

EMDB-43411:
Phosphorylated human NCC in complex with indapamide
Method: single particle / : Zhao YX, Cao EH

EMDB-43412:
Phosphorylated human NCC in complex with chlorthalidone
Method: single particle / : Zhao YX, Cao EH

EMDB-44979:
human sodium chloride cotransporter NCC S344E in the phosphorylation state and in complex with hydrochlorothiazide
Method: single particle / : Cao EH, Zhao YX

PDB-8vpn:
Phosphorylated human NCC in complex with indapamide
Method: single particle / : Zhao YX, Cao EH

PDB-8vpp:
Phosphorylated human NCC in complex with chlorthalidone
Method: single particle / : Zhao YX, Cao EH

PDB-9bwt:
human sodium chloride cotransporter NCC S344E in the phosphorylation state and in complex with hydrochlorothiazide
Method: single particle / : Cao EH, Zhao YX

EMDB-44765:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-44766:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bp9:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, dimer form
Method: single particle / : Ito F, Li Z, Chen XS

PDB-9bpa:
Human DNA polymerase theta helicase domain in complex with inhibitor AB25583, tetramer form
Method: single particle / : Ito F, Li Z, Chen XS

EMDB-38389:
Cryo-EM structure of sheep VMAT2 dimer in an atypical fold
Method: single particle / : Lyu Y, Fu C, Ma H, Sun Z, Su Z, Zhou X

EMDB-38390:
Cryo-EM structure of a frog VMAT2 in an apo conformation
Method: single particle / : Lyu Y, Fu C, Ma H, Sun Z, Su Z, Zhou X

PDB-8xit:
Cryo-EM structure of sheep VMAT2 dimer in an atypical fold
Method: single particle / : Lyu Y, Fu C, Ma H, Sun Z, Su Z, Zhou X

PDB-8xiu:
Cryo-EM structure of a frog VMAT2 in an apo conformation
Method: single particle / : Lyu Y, Fu C, Ma H, Sun Z, Su Z, Zhou X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more