[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,805 items for (author: won & j)

EMDB-65174:
Structure of DOCK6-Cdc42 complex protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65175:
Structure of DOCK6-Cdc42 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65176:
Structure of DOCK6-Rac1 complex protomer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65177:
Structure of DOCK6-Rac1 complex
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65178:
Structure of DOCK6 tetramer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65179:
Structure of DOCK6 tetramer complexed with Rac1
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-65180:
Structure of DOCK6 octamer
Method: single particle / : Kukimoto-Niino M, Katsura K, Ishizuka-Katsura Y, Yonemochi M, Hanada K, Shirouzu M

EMDB-70900:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (D1 domain local refine)
Method: single particle / : Jin M, Rini JM

EMDB-70901:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

EMDB-70902:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein (local refined D1 domain)
Method: single particle / : Jin M, Rini JM

EMDB-70903:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein
Method: single particle / : Jin M, Rini JM

EMDB-70904:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (Local refined D1 domain)
Method: single particle / : Jin M, Rini JM

PDB-9ovk:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (D1 domain local refine)
Method: single particle / : Jin M, Rini JM

PDB-9ovl:
Cryo-EM structure of HCoV-OC43-Lab Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan
Method: single particle / : Jin M, Rini JM

PDB-9ovm:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein (local refined D1 domain)
Method: single particle / : Jin M, Rini JM

PDB-9ovn:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein
Method: single particle / : Jin M, Rini JM

PDB-9ovo:
Cryo-EM structure of HCoV-OC43-C2 Spike glycoprotein in complex with 9O-acetyl GD3 sialoglycan (Local refined D1 domain)
Method: single particle / : Jin M, Rini JM

EMDB-47893:
Cryo-EM map of 2 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-47895:
Cryo-EM map of 4 VRC36 Fabs bound to HIV-1 Env trimer
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Zhang B, Du H, Rubin S, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-74842:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H70
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-74844:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H51
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-74865:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H77
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-74873:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H33
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-74879:
CryoEM structure of H5N1 A/Texas/37/2024 HA bound to Fab H83
Method: single particle / : Morano NC, Ho DD, Shapiro L, Kwong PD

EMDB-70607:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

PDB-9om5:
Composite map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemagglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-75818:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

PDB-11lt:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 1E11
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Kwong PD, Zhou T

EMDB-75894:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

PDB-11ov:
Cryo-EM structure of EV-D68 B3 VLP bound by neutralizing antibody 5H03
Method: single particle / : Cheng J, Lei H, Pletnev S, Morano NC, Zhang B, Du H, Rubin S, Moss DL, Krug PW, Kanekiyo M, Pierson TC, Ruckwardt TJ, Shapiro L, Kwong PD, Zhou T

EMDB-47885:
Cryo-EM local map of dimerized VRC36 Fabs
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Shapiro L, Pierson TC, Doria-Rose NA, Zhou T, Kwong PD

EMDB-71658:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71659:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71660:
Cryo-EM structure of the PGD2-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71661:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Consensus map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, Kim D

EMDB-71662:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (Receptor-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW, kim D

EMDB-71663:
Cryo-EM structure of the BW245C-bound prostaglandin D2 receptor (DP1)-Gs complex (G protein-focused map)
Method: single particle / : Davoudinasab B, Cherezov V, Han GW

EMDB-66973:
High-resolution cryo-EM structure of Maltose Binding Protein
Method: single particle / : Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT

EMDB-68616:
High-resolution cryo-EM structure of human Polo-like kinase 1 in complex with onvansertib
Method: single particle / : Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT

PDB-22rd:
High-resolution cryo-EM structure of human Polo-like kinase 1 in complex with onvansertib
Method: single particle / : Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT

PDB-9xko:
High-resolution cryo-EM structure of Maltose Binding Protein
Method: single particle / : Park K, Yoo Y, Jeon H, Choi K, Kwon E, Lim H, Kim DY, No KT

EMDB-49964:
Global map of six VRC35 Fabs and three MEDI8852 Fabs bound to influenza H3N2 Victoria 2011 hemaglutinin
Method: single particle / : Cheng J, Cale EM, Longo N, Sutton MS, Lei H, Huang R, Morton AJ, Lang ZC, Morano NC, Roark RS, Becker JE, Tsybovsky Y, Li N, Zhang B, Du H, Rubin S, Shapiro L, Pierson TC, Doria-Rose NA, Kwong PD, Zhou T

EMDB-73949:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73950:
CryoEM map of CK52.1 in complex with Q23.V033GT
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9z9l:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-71550:
Structure of beta-1,3-glucan synthase in complex with caspofungin, Rho1 and long glucan
Method: single particle / : Ren Z, Lee SY

EMDB-71551:
Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) in complex with short glucan
Method: single particle / : Ren Z, Lee SY

EMDB-71552:
Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically relevant ground state
Method: single particle / : Ren Z, Lee SY

EMDB-71553:
Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically less relevant L2 state
Method: single particle / : Ren Z, Lee SY

EMDB-71554:
Structure of beta-1,3-glucan synthase from Saccharomyces cerevisiae (ScFks1) at the catalytically less relevant L1 state
Method: single particle / : Ren Z, Lee SY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more