[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 173 items for (author: vidal & j)

EMDB-76684:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

PDB-12qj:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

EMDB-70514:
Structure of ADan amyloid filaments extracted from human brain of Familial Danish Dementia patient
Method: helical / : Ozcan KA, Vago F, Jiang W, Vidal R

EMDB-70521:
Structure of ADan amyloid filaments from synthesized ADan peptide
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

EMDB-70522:
Structure of Type I ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

EMDB-70523:
Structure of Type II ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

EMDB-70524:
Structure of Type III ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

EMDB-70525:
Structure of ABri amyloid filaments from synthesized ABri peptide
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

PDB-9oi9:
Structure of ADan amyloid filaments extracted from human brain of Familial Danish Dementia patient
Method: helical / : Ozcan KA, Vago F, Jiang W, Vidal R

PDB-9oid:
Structure of ADan amyloid filaments from synthesized ADan peptide
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

PDB-9oif:
Structure of Type I ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

PDB-9oig:
Structure of Type II ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

PDB-9oii:
Structure of Type III ABri amyloid filaments extracted from human brain of Familial British Dementia patient
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

PDB-9oip:
Structure of ABri amyloid filaments from synthesized ABri peptide
Method: helical / : Ozcan KA, Vago F, Bharath SR, Jiang W, Vidal R

EMDB-51358:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C individual 2 (variant 1)
Method: helical / : Arseni D

EMDB-51359:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C individual 3 (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-47002:
Type 3 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold
Method: helical / : Xu X, Angera JI, Rajewski HB, Jiang W, Del Valle RJ

PDB-9dme:
Type 3 KD-mxyl filament of miniature tau macrocycle derived from 4R tauopathic fold
Method: helical / : Xu X, Angera JI, Rajewski HB, Jiang W, Del Valle RJ

EMDB-44133:
filament of type 1 KD-mxyl miniature tau macrocycle derived from 4R tauopathic fold
Method: helical / : Xu X, Angera JI, Rajewski HB, Jiang W, Del Valle RJ

PDB-9b3a:
filament of type 1 KD-mxyl miniature tau macrocycle derived from 4R tauopathic fold
Method: helical / : Xu X, Angera JI, Rajewski HB, Jiang W, Del Valle RJ

EMDB-50587:
TMEM106B filaments from Biondi bodies (Biondi variant)
Method: helical / : Ghetti B, Schweighauser M, Jacobsen MH, Gray D, Bacioglu M, Murzin AG, Glazier BS, Vidal R, Newell KL, Gao S, Garringer HJ, Spillantini MG, Scheres SHW, Goedert M

PDB-9fnb:
TMEM106B filaments from Biondi bodies (Biondi variant)
Method: helical / : Ghetti B, Schweighauser M, Jacobsen MH, Gray D, Bacioglu M, Murzin AG, Glazier BS, Vidal R, Newell KL, Gao S, Garringer HJ, Spillantini MG, Scheres SHW, Goedert M

EMDB-46417:
Paired helical tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

EMDB-46420:
Straight tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

EMDB-46422:
Type Ic amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

EMDB-46424:
Type Id amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

PDB-9czi:
Paired helical tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

PDB-9czl:
Straight tau filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

PDB-9czn:
Type Ic amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

PDB-9czp:
Type Id amyloid-beta 42 filaments in dominantly inherited Alzheimer disease with cotton wool plaques
Method: helical / : Hoq MR, Vago FS, Ozcan KA, Bharath SR

EMDB-51319:
P301L tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

EMDB-51320:
P301T type I tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

EMDB-51325:
P301T type II tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

PDB-9gg0:
P301L tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

PDB-9gg1:
P301T type I tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

PDB-9gg6:
P301T type II tau filaments from human brain
Method: helical / : Schweighauser M, Shi Y, Murzin AG, Garringer HJ, Vidal R, Murrell JR, Erro ME, Seelaar H, Ferrer I, van Swieten JC, Ghetti B, Scheres SHW, Goedert M

EMDB-50621:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-50628:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9fof:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9for:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-17362:
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Method: single particle / : Raghavan SSR, Dagil R, Wang KT, Salanti A

PDB-8p2e:
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Method: single particle / : Raghavan SSR, Dagil R, Wang KT, Salanti A

EMDB-40411:
PHF Tau from Down Syndrome
Method: helical / : Hoq MR, Bharath SR, Jiang W, Vago FS

EMDB-40413:
SF Tau from Down Syndrome
Method: helical / : Hoq MR, Bharath SR, Jiang W, Vago FS

EMDB-40416:
Type I beta-amyloid 42 Filaments from Down syndrome
Method: helical / : Hoq MR, Bharath SR, Vago FS, Jiang W

EMDB-40419:
Type IIIa beta-amyloid 40 Filaments from Down syndrome
Method: helical / : Hoq MR, Vago FS, Bharath SR, Jiang W

EMDB-40421:
Type IIIb beta-amyloid 40 Filaments from Down Syndrome
Method: helical / : Hoq MR, Vago FS, Bharath SR, Jiang W

PDB-8seh:
PHF Tau from Down Syndrome
Method: helical / : Hoq MR, Bharath SR, Jiang W, Vago FS

PDB-8sei:
SF Tau from Down Syndrome
Method: helical / : Hoq MR, Bharath SR, Jiang W, Vago FS, Bharath SR

PDB-8sej:
Type I beta-amyloid 42 Filaments from Down syndrome
Method: helical / : Hoq MR, Bharath SR, Vago FS, Jiang W

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more