[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 648 items for (author: tani & h)

EMDB-48430:
SPA of purified HIV-1 CA protein in vitro assembled with IP6 (mature morphology). 50 uM LEN was added post assembly.
Method: single particle / : Ricana CL, Dick RA

EMDB-62816:
E. coli MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-63586:
E. coli MaeB holo form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-63599:
E. coli MaeB acetyl-CoA bound form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9l4n:
E. coli MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9m2i:
E. coli MaeB holo form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9m35:
E. coli MaeB acetyl-CoA bound form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62540:
E. coli MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62541:
B. bacteriovorus MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62542:
B. bacteriovorus MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9krt:
E. coli MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9kru:
B. bacteriovorus MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9krv:
B. bacteriovorus MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62570:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, WT
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

EMDB-62571:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, G355R
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

PDB-9kty:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, WT
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

PDB-9ktz:
Cryo-EM structure of the TIA-1 prion-like domain amyloid fibril, G355R
Method: helical / : Inaoka D, Miyata T, Makino F, Ohtani Y, Ekari M, Kobayashi R, Imamura K, Sakamoto E, Kodama ST, Yoshida N, Kato T, Namba K, Tochio H, Sekiyama N

EMDB-62399:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

PDB-9kl3:
CryoEM structure of Pleurocybella porrigens lectin (PPL) in complex with GalNAc
Method: single particle / : Ishimoto N, Adachi D, Kawabata H, Park SY, Tame JRH, Kamata K

EMDB-64554:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64899:
human mitoirbosome trapped by retapamulin, global map
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-64900:
human mitoirbosome trapped by retapamulin, focused map
Method: single particle / : Ando Y, Nureki O, Itoh Y

PDB-9uwh:
human mitoribosome trapped by retapamulin
Method: single particle / : Ando Y, Nureki O, Itoh Y

EMDB-51694:
Subtomogram average of nucleosomes extracted using Template Learning from cryo-tomograms of Drosophila melanogaster embryos
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51695:
Subtomogram average of nucleosomes extracted using 3D template matching from cryo-tomograms of Drosophila melanogaster embryos
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51696:
Subtomogram average of nucleosomes extracted using DeepFinder from cryo-tomograms of Drosophila melanogaster embryos
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51648:
Reproduced subtomogram average of S. pombe 80S ribosomes from DEF tomograms acquired on cryo-FIB-lamellae based on expert-validated annotations
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51651:
Subtomogram average of S. pombe 80S ribosomes from DEF tomograms acquired on cryo-FIB-lamellae based on raw Template Learning annotations
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51652:
Subtomogram average of S. pombe 80S ribosomes from DEF tomograms acquired on cryo-FIB-lamellae based on true positive Template Learning annotations
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-51653:
Subtomogram average of S. pombe 80S ribosomes from DEF tomograms acquired on cryo-FIB-lamellae based on Template Learning additional annotations non-overlapping with previous expert-validated annotations
Method: subtomogram averaging / : Eltsov M, Harastani M

EMDB-53721:
Asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53722:
Cytoplasmic ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53723:
Inner ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53724:
Nuclear ring asymmetric unit of the NE-NPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53725:
Asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53727:
Top nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53728:
Inner ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53729:
Bottom nuclear ring asymmetric unit of the nNPC in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53731:
Nuclear pore complex in the nuclear envelope (NE-NPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53732:
Nuclear pore complex in nucleoplasmic membranes (nNPC) in S. cerevisiae Not4 deletion Nup188::GFP Nup170::mars cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53739:
Asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53740:
Cytoplasmic ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53741:
Inner ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53742:
Nuclear ring asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53743:
Nuclear basket asymmetric unit of the NE-NPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53744:
Asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53745:
Top cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53746:
Inner ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53747:
Bottom cytoplasmic ring asymmetric unit of the cNPC in D. melanogaster Nup358::VN/Nup358::VC cells
Method: subtomogram averaging / : Sachweh J, Beck M

EMDB-53750:
Nuclear pore complex in the nuclear envelope (NE-NPC) in D. melanogaster Nup358::VN/Nup358::VC cells, composite structure
Method: subtomogram averaging / : Sachweh J, Beck M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more