[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 72 items for (author: smith & tj)

EMDB-45530:
STRUCTURE OF CD4 MIMETIC CJF-III-288 IN COMPLEX WITH BG505 SOSIP.664 HIV-1ENV TRIMER AND 17B FAB
Method: single particle / : Niu L, Tolbert WD, Pazgier M

EMDB-47837:
Murine norovirus allosteric escape mutant D348E
Method: single particle / : Smith TJ, Sherman M

EMDB-47838:
Murine norovirus allosteric V339I escape mutant + calcium
Method: single particle / : Smith TJ, Sherman MB

EMDB-47839:
MNV Allosteric escape mutant V339I + GCDCA
Method: single particle / : Smith TJ, Sherman M

EMDB-47840:
Murine Norovirus MNV-1 with allosteric escape mutation V339I
Method: single particle / : Smith TJ, Sherman M

EMDB-42524:
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Method: single particle / : Huynh KW, Chang JS, Fennell KF, Che Y, Wu H

EMDB-46646:
HIV-1 BaL Env in complex with CD4 mimetic CJF-III-288 and 17b IgG
Method: subtomogram averaging / : Grunst MW

EMDB-42600:
Murine norovirus in the presence of 1mM calcium
Method: single particle / : Smith TJ

EMDB-42604:
Murine norovirus + 1 mM MgCl2
Method: single particle / : Smith TJ

EMDB-42623:
Murine norovirus dialyzed against EDTA
Method: single particle / : Smith TJ

EMDB-27847:
Mouse norovirus strain CR6, attenuated
Method: single particle / : Smith TJ, Sherman M

EMDB-27849:
Mouse norovirus strain CR6 at pH 5.0
Method: single particle / : Smith TJ

EMDB-15786:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli (Apo form)
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-15787:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-15788:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE (C387S mutant)
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-15789:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Lyso-PE
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-15790:
Cryo-EM structure apolipoprotein N-acyltransferase Lnt from E.coli in complex with FP3
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-15791:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Pam3
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0k:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli (Apo form)
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0l:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0m:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with PE (C387S mutant)
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0n:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Lyso-PE
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0o:
Cryo-EM structure apolipoprotein N-acyltransferase Lnt from E.coli in complex with FP3
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

PDB-8b0p:
Cryo-EM structure of apolipoprotein N-acyltransferase Lnt from E. coli in complex with Pam3
Method: single particle / : Degtjarik O, Smithers L, Boland C, Caffrey M, Shalev Benami M

EMDB-27319:
Mouse Norovirus strain WU23
Method: single particle / : Smith TJ

EMDB-27321:
Mouse norovirus strain WU23 + 10mM GCDCA
Method: single particle / : Smith TJ

EMDB-27322:
Murine norovirus strain WU23 at pH 5
Method: single particle / : Smith TJ

EMDB-26862:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

PDB-7uxu:
CryoEM structure of the TIR domain from AbTir in complex with 3AD
Method: helical / : Li S, Nanson JD, Manik MK, Gu W, Landsberg MJ, Ve T, Kobe B

EMDB-12590:
Bacteriophage YerA41 head icosahedral reconstruction
Method: single particle / : Gomez-Raya-Vilanova MV, Leskinen K, Bhattacharjee A, Virta P, Rosenqvist P, Smith JLR, Bayfield OW, Homberger C, Kerrinnes T, Voge J, Pajunen MI, Skurnik M

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit
Method: single particle / : Thomas PV, Smith C, Chen WH, Sankhala RS, Hajduczki A, Choe M, Martinez E, Chang W, Peterson CE, Karch C, Gohain N, Kannadka CB, de Val N, Joyce MG, Modjarrad K

EMDB-24211:
Mouse norovirus (MNV-1) capsid at pH 5.0
Method: single particle / : Smith TJ

EMDB-24226:
Mouse norovirus (MNV-1) capsid at pH 7.5
Method: single particle / : Smith TJ

EMDB-24533:
SARS-CoV-2 spike protein bound to the S2P6 and S2M11 Fab fragments
Method: single particle / : Sauer MM, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-23187:
Mouse Norovirus Protruding domain complexed with neutralizing Fab fragment from mAb A6.2
Method: single particle / : Smith TJ, Sherman MB

EMDB-22491:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22492:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22494:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22497:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22506:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Snell G, Veesler D

EMDB-22507:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (two receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22508:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (three receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22512:
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Method: single particle / : Walls AC, Park YJ, Tortorici MA, Czudnochowski N, Snell G, Veesler D

EMDB-22516:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22517:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv2:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv4:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more