[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 221 items for (author: simon & sm)

EMDB-53008:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

PDB-9qcc:
Activated XauSPARDA filament assembly with bound dsDNA substrate
Method: single particle / : Manakova EN, Zaremba M, Jurgelaitis E

EMDB-54523:
Cryo-EM structure of Candida albicans Vrg4 bound to an inhibitory nanobody.
Method: single particle / : Deme JC, Parker JL, Lea SM, Newstead S

EMDB-54524:
Cryo-EM structure of Candida albicans Vrg4 bound to an inhibitory nanobody and GDP-Mannose.
Method: single particle / : Deme JC, Parker JL, Lea SM, Newstead S

EMDB-70475:
HIV-1 Env BG505 SOSIP.664-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

EMDB-70476:
HIV-1 Env BG505 SOSIP.664-dPG-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

PDB-9ogt:
HIV-1 Env BG505 SOSIP.664-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

PDB-9ogu:
HIV-1 Env BG505 SOSIP.664-dPG-His in complex with PGT122 and 3BNC117 Fabs
Method: single particle / : Andrade TG, Ozorowski G, Ward AB

EMDB-51097:
CLC7/OSTM1 complex with bound PIP2 lipid
Method: single particle / : Lin Y, Deme JC, Lea SM, Newstead S

EMDB-51098:
CLC7/OSTM1 complex in the absence of PIP2 lipid.
Method: single particle / : Lin Y, Deme JC, Lea SM, Newstead S

EMDB-51099:
CLC7(Y715C)/OSTM1 complex
Method: single particle / : Lin Y, Deme JC, Lea SM, Newstead S

EMDB-51365:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

EMDB-51377:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

PDB-9ghz:
Cryo-EM structure of human SLC45A4 in lipid nanodiscs
Method: single particle / : Markusson S, Newstead S

PDB-9giu:
Cryo-EM structure of human SLC45A4 in detergent
Method: single particle / : Markusson S, Deme JC, Lea SM, Newstead S

EMDB-52226:
Structure of Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

EMDB-52227:
Structure of 2x Zincore (SEPHS1:QRICH1) binding to ZFP91 on DNA
Method: single particle / : Borza R, Perrakis A

EMDB-50532:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50534:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 1
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-50535:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 2
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

PDB-9fl7:
Cryo-EM structure of human AK2 bound to reduced human AIFM1 (residues 102-613), class 3
Method: single particle / : Lauer SM, Spahn CMT, Schwefel D

EMDB-18466:
Symmetric structure of Satellite Tobacco Necrosis Virus-Like Particle with PS1-5 gRNA
Method: single particle / : Javed A, Mata PC, Stockley P

EMDB-51841:
50S subunit precursor C-CP_H68_L35
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51976:
Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51828:
50S subunit precursor d126_(L29)-/(L22)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51829:
50S subunit precursor C_(L29)-/(L22)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51830:
50S subunit precursor C_(L22)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51831:
50S subunit precursor C_(L22)-~H61
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51832:
50S subunit precursor C_(L22)-_GAC
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51833:
50S subunit precursor C-CP_(L22)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51834:
50S subunit precursor C-CP_YjgA_(L22)-~H61
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51835:
50S subunit precursor C-CP_YjgA_(L22)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51836:
50S subunit precursor C-CP_YjgA_L22
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51837:
50S subunit precursor C_L2
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51838:
50S subunit precursor C_H68
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51839:
50S subunit precursor C-CP_L2-L28
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51840:
50S subunit precursor C-CP_H68
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51842:
50S subunit precursor 50S_(L16)-
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51843:
mature 50S subunit
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

EMDB-51973:
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Method: single particle / : Lauer S, Nikolay R, Spahn CMT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more