[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 194 items for (author: shen & lb)

EMDB-65977:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, trimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

EMDB-65968:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, dimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

EMDB-72976:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

PDB-9yi2:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-46582:
Cryo-electron microscopy structure of TnsE-A453V/D523N bound to 3'-recessed DNA
Method: single particle / : Krishnan SS, Guarne A

EMDB-48671:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48677:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-48730:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mvu:
C6 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9mw5:
D1 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gB
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

PDB-9my8:
D7 Herpes Virus Simplex Neutralizing Nanobody Bound to HSV Glycoprotein gD
Method: single particle / : Viadiu H, Abernathy E, Lee CV, Hung M, Yu Y, Xing W, Yu X

EMDB-43784:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum E1, major class
Method: single particle / : Gao L

EMDB-43785:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum E1, minor class
Method: single particle / : Gao L

EMDB-43786:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum strain A1-ST7B, major class
Method: single particle / : Gao L

PDB-9arj:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum E1, major class
Method: single particle / : Gao L

PDB-9ark:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum E1, minor class
Method: single particle / : Gao L

PDB-9arl:
CryoEM structure of BoNT-NTNH-OrfX2 complex from Clostridium botulinum strain A1-ST7B, major class
Method: single particle / : Gao L

EMDB-46478:
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Kanai T, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-46532:
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Hodges S, Morano NC, Shapiro L, Kwong PD, Gorman J

PDB-9d1w:
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Kanai T, Morano NC, Shapiro L, Kwong PD, Gorman J

PDB-9d3d:
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Hodges S, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-61286:
The capsid protein of HIV 1
Method: single particle / : Yi G, Ma J, Zhang P

EMDB-61287:
The RNA polymerase II elongation complex from Saccharomyces cerevisiae
Method: single particle / : Yi G, Ma J, Zhang P

PDB-9ja0:
The capsid protein of HIV 1
Method: single particle / : Yi G, Ma J, Zhang P

PDB-9ja1:
The RNA polymerase II elongation complex from Saccharomyces cerevisiae
Method: single particle / : Yi G, Ma J, Zhang P

EMDB-44510:
Cryo-EM structure of mAb8-24 bound to 426c.WITO.TM.SOSIP
Method: single particle / : Hurlburt NK, Pancera M

PDB-9bge:
Cryo-EM structure of mAb8-24 bound to 426c.WITO.TM.SOSIP
Method: single particle / : Hurlburt NK, Pancera M

EMDB-50353:
ss-dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

EMDB-50355:
dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

PDB-9ffb:
ss-dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

PDB-9fff:
dsDNA-FANCD2-FANCI complex
Method: single particle / : Alcon P, Passmore LA

EMDB-40218:
CryoEM structure of TnsC(1-503) bound to TnsD(1-318) from E.coli Tn7
Method: single particle / : Shen Y, Guarne A

EMDB-40221:
CryoEM structure of the TnsC(1-503)-TnsD(1-318)-DNA complex in a 7:2:1 stoichiometry from E. coli Tn7
Method: single particle / : Shen Y, Guarne A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more