[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,611 items for (author: shen & d)

EMDB-62027:
Cryo-EM structure of E coli pstSCAB in the catalytic intermediate state
Method: single particle / : Chen QF, Xiao H

EMDB-62031:
Cryo-EM structure of E coli pstSCAB in the pretranslocation state
Method: single particle / : Chen QF, Xiao H

EMDB-62032:
Cryo-EM structure of E coli pstSCAB in the resting state
Method: single particle / : Chen QF, Xiao H

PDB-9k3s:
Cryo-EM structure of E coli pstSCAB in the catalytic intermediate state
Method: single particle / : Chen QF, Xiao H

PDB-9k3x:
Cryo-EM structure of E coli pstSCAB in the pretranslocation state
Method: single particle / : Chen QF, Xiao H

PDB-9k3y:
Cryo-EM structure of E coli pstSCAB in the resting state
Method: single particle / : Chen QF, Xiao H

EMDB-46602:
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

PDB-9d74:
CryoEM structure of anti-MHC-I Fab B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

EMDB-46600:
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

EMDB-46601:
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Lei H, Huang R, Margulies DH

EMDB-70276:
CryoEM structure of anti-MHC-I mAb B1.23.2 Fc domains
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Huang R

PDB-9d72:
CryoEM structure of anti-MHC-I Fab M1/42 complex with H2-Dd
Method: single particle / : Jiang J, Natarajan K, Margulies DH, Lei H, Huang R

PDB-9d73:
CryoEM structure of anti-MHC-I mAb B1.23.2 complex with HLA-B44:05
Method: single particle / : Jiang J, Natarajan K, Lei H, Huang R, Margulies DH

PDB-9oa9:
CryoEM structure of anti-MHC-I mAb B1.23.2 Fc domains
Method: single particle / : Jiang J, Natarajan K, Margulies DH

EMDB-63785:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

PDB-9mc2:
Cryo-EM structure of dopaminated Tau fibril
Method: helical / : Liu Z, Li X, Liu C

EMDB-72964:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-72965:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yha:
Cryo-EM structure of IDH1 R132H
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

PDB-9yhb:
Cryo-EM structure of IDH1 R132H C269S
Method: single particle / : Hu L, Seo HS, Dhe-Paganon S, Berezuk AM, Tuttle KS, Zhu X, Subramaniam S, Wu X

EMDB-48508:
Complex of FMDV Asia1/JS/05 and porcine-derived neutralizing monoclonal antibody PAS12
Method: single particle / : Wu S, Lei D

EMDB-48509:
Complex of FMDV Asia1/JS/05 and porcine-derived neutralizing monoclonal antibody PAS5
Method: single particle / : Wu S, Lei D

PDB-9mpz:
Complex of FMDV Asia1/JS/05 and porcine-derived neutralizing monoclonal antibody PAS12
Method: single particle / : Wu S, Lei D

PDB-9mq0:
Complex of FMDV Asia1/JS/05 and porcine-derived neutralizing monoclonal antibody PAS5
Method: single particle / : Wu S, Lei D

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-62901:
PSI trimer of Synechocystis sp. PCC 6803
Method: single particle / : Shen LL, Han GY

EMDB-63192:
DOI-bound Serotonin 2A (5-HT2A) receptor-Gi complex
Method: single particle / : Xu Z, Shao ZH

EMDB-63193:
Psilocin-bound Serotonin 2A (5-HT2A) receptor-Gi complex
Method: single particle / : Xu Z, Shao ZH

EMDB-63194:
DOI-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

EMDB-63195:
Ariadne-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

EMDB-63196:
DOI-NBOMe-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

PDB-9ll7:
DOI-bound Serotonin 2A (5-HT2A) receptor-Gi complex
Method: single particle / : Xu Z, Shao ZH

PDB-9ll8:
Psilocin-bound Serotonin 2A (5-HT2A) receptor-Gi complex
Method: single particle / : Xu Z, Shao ZH

PDB-9ll9:
DOI-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

PDB-9lla:
Ariadne-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

PDB-9llb:
DOI-NBOMe-bound Serotonin 2A (5-HT2A) receptor-Gq complex
Method: single particle / : Xu Z, Shao ZH

EMDB-55441:
In situ structure of wild-type HIV-1 CA hexamer prior to nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55443:
In situ structure of wild-type HIV-1 CA hexamer post nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55445:
In situ structure of N74D HIV-1 CA hexamer post nuclear import
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55446:
In situ structure of the H1-bound nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55447:
In situ structure of stacking H1-bound nucleosomes
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55448:
In situ structure of the H1-bound nucleosome in stacking nucleosomes
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55449:
In situ structure of the core nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55450:
In situ structure of the open-linker H1-bound nucleosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-62903:
PSI dimer of Synechocystis sp. PCC 6803
Method: single particle / : Shen LL, Han GY

EMDB-66373:
The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Method: single particle / : Li XY, Mao ZY, Han GY

PDB-9wyp:
The PSI-ACPI supercomplex from the cryptophyte Chroomonas placoidea
Method: single particle / : Li XY, Mao ZY, Han GY

EMDB-65801:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1.5 IgG)
Method: single particle / : Lv NN, Yang RY

EMDB-65802:
Cryo-EM structure of SARS-CoV-2 WT 6p spike protein in complex with P5-1C8 IgG (1 IgG)
Method: single particle / : Lv NN, Yang RY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more