[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,811 items for (author: shen & b)

EMDB-65977:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, trimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

PDB-9whu:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, trimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

EMDB-65968:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, dimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

PDB-9whk:
Structure of Klebsiella pneumoniae trypsin-HamAB bound with DNA, dimer
Method: single particle / : Huang PP, Liu JX, Shen LB, Chen MR, Xiao YB

EMDB-75039:
Human AGO2 bound to a miR-20a guide and a position 10-11 mismatched target
Method: single particle / : Savidge A, Nakanishi K

EMDB-69005:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-69006:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

PDB-23iv:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

PDB-23iw:
Cannabinoid Receptor 1-Gi Complex
Method: single particle / : Liao Y, Zhang Y

EMDB-62782:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l36:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-62778:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62780:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62861:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

PDB-9l2o:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l2t:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l6p:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-64578:
local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-64579:
The apo density map of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-64580:
The ADP-bound density map of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxa:
local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxb:
The apo structure of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9uxc:
The ADP-bound structure of BCL7B-containing ARP module of the human SWI/SNF complex
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-65442:
Cryo-EM Structure of Nipah Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65444:
Cryo-EM Structure of Measles Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65445:
Cryo-EM Structure of Nipah Virus Polymerase in complex with GL22
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65446:
Cryo-EM structure of Measles Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65447:
Cryo-EM Structure of Peste Des Petits Ruminants Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-65448:
Cryo-EM structure of Peste Des Petits Ruminants Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-68072:
Cryo-EM Structure of Nipah Virus Polymerase in complex with G671
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-21xo:
Cryo-EM Structure of Nipah Virus Polymerase in complex with G671
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxv:
Cryo-EM Structure of Nipah Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxx:
Cryo-EM Structure of Measles Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxy:
Cryo-EM Structure of Nipah Virus Polymerase in complex with GL22
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vxz:
Cryo-EM structure of Measles Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vy0:
Cryo-EM Structure of Peste Des Petits Ruminants Virus Polymerase in complex with ERDRP-0519
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

PDB-9vy1:
Cryo-EM structure of Peste Des Petits Ruminants Virus L Protein bound by Phosphoprotein Tetramer
Method: single particle / : Xue L, Gui J, Chang T, Pan H, Xiong X

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-64966:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

PDB-9vcs:
Cryo-EM structure of semi-closed state of Botulinum neurotoxin serotype A at pH 7.4
Method: single particle / : Zerang Z, Liu Z, He J, Wang X, Qi F, Lei D, Zhi D, Wang D

EMDB-61577:
Cryo-EM structure of DRT2-RT-ncRNA binary complex
Method: single particle / : Zhang H, Zhang S

PDB-9jl3:
Cryo-EM structure of DRT2-RT-ncRNA binary complex
Method: single particle / : Zhang H, Zhang S

EMDB-72976:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

PDB-9yi2:
Human EEPD1 EEP domain dimer
Method: single particle / : Liu M, Shen R, Tainer J

EMDB-64791:
CryoEM structure of human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

PDB-9v5p:
Human DNMT1 (aa 698-1616) in complex with hemimethylated dsDNA and inhibitor DMT207
Method: single particle / : Li Z

EMDB-49597:
CCT G beta 5 S123L complex state 3
Method: single particle / : Mack DC, Shen PS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more