[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 62 items for (author: shaikh & tr)

PDB-9ig6:
Hen egg-white lysozyme structure determined by 3DED/MicroED on a 200 keV microscope
Method: electron crystallography / : Shaikhqasem A, Hamdi F, Machner L, Parthier C, Breithaupt C, Kyrilis FL, Feller SM, Kastritis PL, Stubbs MT

EMDB-45229:
In-cell Toxoplasma gondii nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45230:
In-cell Toxoplasma gondii nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45231:
In-cell Toxoplasma gondii nuclear pore complex nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45232:
In-cell Toxoplasma gondii nuclear pore complex membrane focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45233:
In-cell Toxoplasma gondii nuclear pore complex lumenal ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45260:
In-cell Toxoplasma gondii symmetry-expanded nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-44372:
In-cell Saccharomyces cerevisiae nuclear pore complex with single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44377:
In-cell Saccharomyces cerevisiae nuclear pore complex with double nuclear ring and basket
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44379:
In-cell Mus musculus nuclear pore complex with nuclear basket
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-44381:
In-cell Toxoplasma gondii nuclear pore complex
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45197:
In-cell Saccharomyces cerevisiae symmetry-expanded nuclear pore complex with double nuclear ring and basket
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45198:
In-cell Saccharomyces cerevisiae symmetry-expanded nuclear pore complex with single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45199:
In-cell Saccharomyces cerevisiae nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45200:
In-cell Saccharomyces cerevisiae nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45201:
In-cell Saccharomyces cerevisiae nuclear pore complex single nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45202:
In-cell Saccharomyces cerevisiae nuclear pore complex double nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45203:
In-cell Saccharomyces cerevisiae nuclear pore complex nuclear basket focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45204:
In-cell Saccharomyces cerevisiae nuclear pore complex membrane focused refinement for single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45205:
In-cell Saccharomyces cerevisiae nuclear pore complex membrane focused refinement for double nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45216:
In-cell Mus musculus nuclear pore complex with nuclear basket consensus map
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45219:
In-cell Mus musculus nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45220:
In-cell Mus musculus nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45222:
In-cell Mus musculus nuclear pore complex nuclear ring focused refinement
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45223:
In-cell Mus musculus nuclear pore complex basket focused refinement
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45227:
In-cell Mus musculus nuclear pore complex membrane focused refinement
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45228:
In-cell Toxoplasma gondii symmetry-expanded nuclear pore complex
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45255:
In-cell Saccharomyces cerevisiae C8-symmetrised nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45256:
In-cell Saccharomyces cerevisiae symmetry-expanded nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45257:
In-cell Mus musculus nuclear pore complex with nuclear basket consensus map
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45258:
In-cell Mus musculus symmetry-expanded nuclear pore complex with nuclear basket consensus map
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-45259:
In-cell Toxoplasma gondii C8-symmetrised nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-17015:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

PDB-8ooh:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

EMDB-16998:
Cryo-EM structure of subfamily III haloalkane dehalogenase DhmeA from Haloferax mediterranei
Method: single particle / : Marek M, Novacek J, Polak M, Chmelova K

EMDB-12273:
Cryo-EM structure of the human FERRY complex
Method: single particle / : Quentin D, Klink BU, Raunser S

EMDB-13969:
Active state of GluA1/2 in complex with TARP gamma 8, L-glutamate and CTZ
Method: single particle / : Herguedas B, Kohegyi B

EMDB-13970:
Active state of GluA1/A2 AMPA receptor in complex with TARP gamma-8 (TMD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SH, Lape R, Krieger JM, Greger IH

EMDB-13971:
Active state of GluA1/A2 AMPA receptor in complex with TARP gamma-8 (LBD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SH, Lape R, Krieger JM, Greger IH

EMDB-13972:
Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (TMD-LBD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh S, Lape R, Krieger JM, Greger IH

EMDB-13973:
Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (TMD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SH, Lape R, Krieger JM, Greger IH

EMDB-13974:
Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (LBD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SH, Lape R, Krieger JM, Greger IH

PDB-7qhb:
Active state of GluA1/2 in complex with TARP gamma 8, L-glutamate and CTZ
Method: single particle / : Herguedas B, Kohegyi B, Zhang D, Greger IH

PDB-7qhh:
Desensitized state of GluA1/2 AMPA receptor in complex with TARP-gamma 8 (TMD-LBD)
Method: single particle / : Herguedas B, Kohegyi B, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh S, Lape R, Krieger JM, Greger IH

EMDB-2970:
Cryo-EM structure of E. coli 70S ribosome bound to additional non-ribosomal proteins.
Method: single particle / : Shasmal M, Dey S, Shaikh TR, Bhakta S, Sengupta J

EMDB-2972:
Cryo-EM structure of E. coli 70S ribosome bound to additional non-ribosomal proteins.
Method: single particle / : Shasmal M, Dey S, Shaikh TR, Bhakta S, Sengupta J

PDB-5flx:
Mammalian 40S HCV-IRES complex
Method: single particle / : Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT

EMDB-3221:
Mammalian 80S HCV-IRES complex, Classical
Method: single particle / : Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT

EMDB-3223:
Mammalian 80S HCV-IRES complex, Classical / no head tilt
Method: single particle / : Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT

EMDB-3224:
Mammalian 40S HCV-IRES complex
Method: single particle / : Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more