[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 181 items for (author: ryu & b)

EMDB-45474:
Structure of MORC2 PD mutant binding to AMP-PNP
Method: single particle / : Tan W, Shakeel S

EMDB-45475:
MORC2 ATPase dead mutant - S87A
Method: single particle / : Tan W, Shakeel S

EMDB-45476:
MORC2 PD mutant with DNA
Method: single particle / : Tan W, Shakeel S

EMDB-45477:
MORC2 ATPase structure
Method: single particle / : Tan W, Shakeel S

EMDB-45478:
MORC2 ATPase with DNA
Method: single particle / : Tan W, Shakeel S

PDB-9cdf:
Structure of MORC2 PD mutant binding to AMP-PNP
Method: single particle / : Tan W, Shakeel S

PDB-9cdg:
MORC2 ATPase dead mutant - S87A
Method: single particle / : Tan W, Shakeel S

PDB-9cdh:
MORC2 PD mutant with DNA
Method: single particle / : Tan W, Shakeel S

PDB-9cdi:
MORC2 ATPase structure
Method: single particle / : Tan W, Shakeel S

PDB-9cdj:
MORC2 ATPase with DNA
Method: single particle / : Tan W, Shakeel S

EMDB-38391:
Cryo-EM complex structure between hydroxylase and regulatory component from soluble methane monooxygenase
Method: single particle / : Hwang Y, Ryu B, Pozharski E, Lee SJ

EMDB-39540:
Cryo-EM structure of hydroxylase in soluble methane monooxygenase from Methylosinus sporium 5
Method: single particle / : Hwang Y, Ryu B, Pozharski E, Lee SJ

PDB-8xiw:
Cryo-EM complex structure between hydroxylase and regulatory component from soluble methane monooxygenase
Method: single particle / : Hwang Y, Ryu B, Pozharski E, Lee SJ

PDB-8yrd:
Cryo-EM structure of hydroxylase in soluble methane monooxygenase from Methylosinus sporium 5
Method: single particle / : Hwang Y, Ryu B, Pozharski E, Lee SJ

EMDB-39902:
Cryo-EM structure of Somatostatin receptor 3 (SSTR3) with Gi1 complex
Method: single particle / : Yun JH

EMDB-39903:
Cryo-EM structure of Somatostatin receptor 5 (SSTR5) with Gi1 complex
Method: single particle / : Kim Y, Yun JH

EMDB-46464:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-46465:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0w:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0x:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-41821:
Plasmodium falciparum gametocyte surface protein Pfs48/45 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

EMDB-41822:
Local refinement of Plasmodium falciparum gametocyte surface protein Pfs48/45 Domains 1 and 2 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

PDB-8u1p:
Local refinement of Plasmodium falciparum gametocyte surface protein Pfs48/45 Domains 1 and 2 in complex with neutralizing antibodies
Method: single particle / : Kucharska I, Hailemariam S, Ivanochko D, Rubinstein J, Julien JP

EMDB-37132:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

EMDB-37134:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

EMDB-37135:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

EMDB-37136:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

EMDB-37137:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

EMDB-37138:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-37140:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

EMDB-37141:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

EMDB-37142:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdd:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

PDB-8kdf:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

PDB-8kdg:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

PDB-8kdh:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

PDB-8kdi:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

PDB-8kdj:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdn:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

PDB-8kdo:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

PDB-8kdp:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-45831:
CryoEM Structure of the human full length NAD Kinase
Method: single particle / : Li Y, Chen Z, Labesse G, Hoxhaj G

EMDB-45832:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

EMDB-45856:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase bound to NAD
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

PDB-9cr3:
CryoEM Structure of the human full length NAD Kinase
Method: single particle / : Li Y, Chen Z, Labesse G, Hoxhaj G

PDB-9cr4:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

PDB-9cra:
CryoEM Structure of the C-terminally truncated form of human NAD Kinase bound to NAD
Method: single particle / : Li Y, Chen Z, Mary C, Labesse G, Hoxhaj G

EMDB-61095:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

PDB-9j2f:
Structure of photosynthetic LH1-RC complex from the purple bacterium Blastochloris tepida
Method: single particle / : Kimura Y, Kanno R, Mori K, Matsuda Y, Seto R, Takenaka S, Mino H, Ohkubo T, Honda M, Sasaki YC, Kishikawa J, Mitsuoka K, Mio K, Hall M, Purba ER, Mochizuki T, Mizoguchi A, Humbel BM, Madigan MT, Wang-Otomo ZY, Tani K

EMDB-60274:
SARS-CoV-2 XBB.1.5 spike glycoprotein trimer in complex with antigen-binding fragments (Fabs)
Method: single particle / : Sugita Y, Kimura K, Noda T, Hashiguchi T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more