[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 122 items for (author: rossi & f)

EMDB-53489:
Cryo-EM structure of human MATE1 in complex with cimetidine
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53506:
Cryo-EM structure of human MATE1 in complex with MPP
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53507:
Cryo-EM structure of human MATE1 in complex with metformin
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-53508:
Cryo-EM structure of human MATE1
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r10:
Cryo-EM structure of human MATE1 in complex with cimetidine
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1e:
Cryo-EM structure of human MATE1 in complex with MPP
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1f:
Cryo-EM structure of human MATE1 in complex with metformin
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

PDB-9r1g:
Cryo-EM structure of human MATE1
Method: single particle / : Romane K, Peteani G, Mukherjee S, Kowal J, Rossi L, Hou J, Kossiakoff A, Lemmin T, Locher KP

EMDB-48770:
PP2A Holoenzyme with B55 subunit
Method: single particle / : Shi S, Li X, Alderman C, Huang W, Foulon N, Rossi J, Cui S, Taylor D, Ford HL, Zhao R

EMDB-51168:
MtUvrA2 bound to endogenous E. coli DNA at low resolution
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-48798:
PP2A-B55 Holoenzyme with Eya3
Method: single particle / : Shi S, Alderman C, Huang W, Zhao R

EMDB-48799:
PP2A-B55 Holoenzyme with B55i
Method: single particle / : Shi S, Alderman C, Huang W, Zhao R

PDB-9n0y:
PP2A-B55 Holoenzyme with Eya3
Method: single particle / : Shi S, Li X, Alderman C, Zhao R

PDB-9n0z:
PP2A-B55 Holoenzyme with B55i
Method: single particle / : Shi S, Li X, Alderman C, Zhao R

EMDB-51946:
Cryo-EM structure of the Vibrio natrigens 30S ribosomal subunit in complex with spectinomycin.
Method: single particle / : Raulf KF, Koller TO, Beckert B, Morici M, Lepak A, Bange G, Wilson DN

EMDB-51947:
Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).
Method: single particle / : Raulf KF, Koller TO, Beckert B, Morici M, Lepak A, Bange G, Wilson DN

PDB-9h90:
Cryo-EM structure of the Vibrio natrigens 30S ribosomal subunit in complex with spectinomycin.
Method: single particle / : Raulf KF, Koller TO, Beckert B, Morici M, Lepak A, Bange G, Wilson DN

PDB-9h91:
Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).
Method: single particle / : Raulf KF, Koller TO, Beckert B, Morici M, Lepak A, Bange G, Wilson DN

EMDB-51169:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51170:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51171:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 1)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51172:
MtUvrA2UvrB2 bound to damaged oligonucleotide (half 2)
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51173:
Composite map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51174:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-51220:
Consensus map of MtUvrA2UvrB2-DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga2:
MtUvrA2 dimer empty
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga3:
MtUvrA2UvrB bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga4:
MtUvrA2UvrB2 bound to damaged oligonucleotide
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

PDB-9ga5:
MtUvrA2 bound to endogenous E. coli DNA
Method: single particle / : Genta M, Capelli R, Ferrara G, Rizzi M, Rossi F, Jeruzalmi D, Bolognesi M, Chaves-Sanjuan A, Miggiano R

EMDB-19880:
Cryo-EM structure of human apoferritin (grid prepared with EasyGrid technology)
Method: single particle / : Gemin O, Mattei S, Papp G

EMDB-45035:
Consensus map of mink RyR3 in closed conformation
Method: single particle / : Chen YS, Van Petegem F

EMDB-45107:
Local refinement map of mink RyR3 in closed conformation using mask 1 (FKBP12.6/NTD/Nsol/SPRY/Repeat1&2)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45108:
Local refinement map of mink RyR3 in closed conformation using mask 2 (Jsol/Csol/Bsol)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45109:
Local refinement map of mink RyR3 in closed conformation using mask 3 (Bsol/Repeat3&4)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45110:
Local refinement map of mink RyR3 in closed conformation using mask 4 (TMD/CTD)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45111:
Consensus map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Method: single particle / : Chen YS, Van Petegem F

EMDB-45112:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 1 (FKBP12.6/NTD/Nsol/SPRY/Repeat1&2)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45113:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 2 (Jsol/Csol/Bsol)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45114:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 3 (Bsol/Repeat3&4)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45115:
Local refinement map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine using mask 4 (TMD/CTD)
Method: single particle / : Chen YS, Van Petegem F

EMDB-45116:
Composite map of mink RyR3 in closed conformation
Method: single particle / : Chen YS, Van Petegem F

EMDB-45117:
Composite map of mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Method: single particle / : Chen YS, Van Petegem F

PDB-9c1e:
Mink RyR3 in closed conformation
Method: single particle / : Chen YS, Van Petegem F

PDB-9c1f:
Mink RyR3 in open conformation bound to Ca2+/ATP/caffeine
Method: single particle / : Chen YS, Van Petegem F

EMDB-42489:
Bacillus niacini flavin monooxygenase
Method: single particle / : Richardson BC, French JB

EMDB-42490:
Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Method: single particle / : Richardson BC, French JB

PDB-8urc:
Bacillus niacini flavin monooxygenase
Method: single particle / : Richardson BC, French JB

PDB-8urd:
Bacillus niacini flavin monooxygenase with bound (2,6)DHP
Method: single particle / : Richardson BC, French JB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more