[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 416 items for (author: rode & m)

EMDB-56149:
L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

PDB-9tqg:
L. pneumophila 3-methylcrotonyl-CoA carboxylase A1B6
Method: single particle / : Meir A, Durie C, Somarathne R, Shrestha R, Zehra M, Brodeur C, Bhella D, Lai WC

EMDB-52253:
Influenza Neuraminidase in complex with N-Acyl Oseltamivir inhibitor
Method: single particle / : Moran E, Davies G

EMDB-52254:
Influenza Neuraminidase in complex with N-Acyl Oseltamivir inhibitor
Method: single particle / : Moran E, Davies G

EMDB-52255:
Influenza Neuraminidase in complex with N-Acyl Oseltamivir inhibitor
Method: single particle / : Moran E, Davies G

EMDB-48606:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

EMDB-48615:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

PDB-9mte:
CryoEM structure of extracellular domain of human HER2 complexed with two nano-bodies 27A05 and 47D05
Method: single particle / : Bruch EM, Rak A

PDB-9mtx:
CryoEM structure of extracellular domain of human HER2 complexed with nano-bodies 29E09
Method: single particle / : Bruch EM, Rak A

EMDB-53880:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (post-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-53882:
The L1 amyloid-beta(1-40)fibril in the presence of anle138b (pre-treatment)
Method: helical / : Frieg B, Han M, Griesinger C, Schroeder GF

EMDB-51027:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 dimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51028:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 trimer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51029:
Complex of nanodisc-embedded alpha5beta1 integrin with Gal3 tetramer
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-54200:
Complex of peptidisc-embedded alpha5beta1 integrin and galectin-3
Method: single particle / : Roderer D, Hamitouche I, Dransart E, Shafaq-Zadah M, Johannes L

EMDB-51649:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 1 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51650:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 2 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51654:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 3 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51655:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 4 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51657:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 5 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51658:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Local refinement 6 of 6.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-51661:
CryoEM structure of the native Chlamydomonas reinhardtii Flagella Membrane Glycoprotein 1B. Low resolution consensus.
Method: single particle / : Nievergelt AP, Hoepfner LM, Matrino F, Scholz M, Foster HE, Rodenfels J, von Appen A, Hippler M, Pigino G

EMDB-53048:
Extracellular domain of the Fap2 autotransporter adhesin from Fusobacterium nucleatum ATCC23726
Method: single particle / : Schoepf F, Marongiu GL, Milaj K, Sprink T, Kikhney J, Moter A, Roderer D

EMDB-53049:
Membrane-distal part of extracellular domain of the Fap2 autotransporter adhesin from Fusobacterium nucleatum ATCC23726
Method: single particle / : Schoepf F, Marongiu GL, Milaj K, Sprink T, Kikhney J, Moter A, Roderer D

EMDB-53052:
Complex of Fap2 from Fusobacterium nucleatum with human TIGIT
Method: single particle / : Schoepf F, Marongiu GL, Milaj K, Sprink T, Kikhney J, Moter A, Roderer D

PDB-9qe7:
Membrane-distal part of extracellular domain of the Fap2 autotransporter adhesin from Fusobacterium nucleatum ATCC23726
Method: single particle / : Schoepf F, Marongiu GL, Milaj K, Sprink T, Kikhney J, Moter A, Roderer D

EMDB-70614:
mGluR7 in native membrane vesicles
Method: single particle / : Mandala V, Fu Z, MacKinnon R

EMDB-70615:
mGluR7 in native membrane vesicles
Method: single particle / : Mandala V, Fu Z, MacKinnon R

EMDB-70634:
human Kv2.1 reconstituted in liposomes
Method: single particle / : Mandala VS, MacKinnon R, Fu Z

EMDB-70635:
human HCN1 reconstituted in liposomes
Method: single particle / : Mandala VS, MacKinnon R, Fu Z

PDB-9omo:
mGluR7 in native membrane vesicles
Method: single particle / : Mandala V, Fu Z, MacKinnon R

PDB-9omp:
mGluR7 in native membrane vesicles
Method: single particle / : Mandala V, Fu Z, MacKinnon R

EMDB-50436:
Cryo-EM Structure of Amyloid-beta Fibrils from Mouse Brain Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50437:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 1
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50438:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 2
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50439:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 3
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50440:
Cryo-EM Structure of Amyloid-beta Fibrils Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation - Polymorph 4
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50441:
Cryo-EM Structure of Tau Filaments from Individuals Carrying the Uppsala AbetaUpp(1-42)delta(19-24) Mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-50442:
Cryo-EM Structure of Amyloid-beta Fibrils from Individual Carrying the Uppsala AbetaUpp(1-42)delta(19-24) mutation
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Pagnon de la Vega M, Roeder C, Heidler TV, Syvaenen S, Willbold D, Sehlin D, Ingelsson M, Schroeder GF

EMDB-51248:
NME1 94-Phosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

EMDB-51250:
NME1 94-Diphosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

EMDB-51251:
NME1 94-Oligophosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

PDB-9gd6:
NME1 94-Phosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

PDB-9gd8:
NME1 94-Diphosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

PDB-9gd9:
NME1 94-Oligophosphoserine
Method: single particle / : Roderer D, Schoepf F, Fiedler D, Celik A

EMDB-49993:
Kv2.1 with voltage sensor in the up conformation under high potassium
Method: single particle / : Mandala VS, MacKinnon R

EMDB-49994:
Kv2.1 with voltage sensor in the up conformation under low potassium
Method: single particle / : Mandala VS, MacKinnon R

EMDB-49995:
Kv2.1 in an intermediate conformation with 2 voltage sensors down and an open pore
Method: single particle / : Mandala VS, MacKinnon R

EMDB-49996:
Kv2.1 with 4 voltage sensors down and a constricted pore
Method: single particle / : Mandala VS, MacKinnon R

PDB-9o10:
Kv2.1 with voltage sensor in the up conformation under high potassium
Method: single particle / : Mandala VS, MacKinnon R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more