[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 184 items for (author: port & sa)

EMDB-73866:
Raw consensus map of rEatAp complexed with Fab G12
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73867:
Constituent EM map: local refinement of putative MUC2 binding domain of rEatAp and Fv domain of Fab G12
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73868:
Constituent EM map: local refinement of putative MUC2 binding domain of rEatAp and Fab G12 from best Fab-containing 2D classes
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73869:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 25
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73870:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody G12
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73871:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 15
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73872:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73873:
Cryo-EM structure of Secreted extracellular protein A (SepA) from Shigella flexneri complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73874:
Cryo-EM structure of Protein involved in colonization (Pic) from Enteroaggregative Escherichia coli complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z76:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 25
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z77:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody G12
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z78:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 15
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z79:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z7a:
Cryo-EM structure of Secreted extracellular protein A (SepA) from Shigella flexneri complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

PDB-9z7b:
Cryo-EM structure of Protein involved in colonization (Pic) from Enteroaggregative Escherichia coli complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-56682:
In situ ribosome structure from environmental sample of Pseudo-nitzschia
Method: subtomogram averaging / : Leisch N, Pyle E

EMDB-73699:
Structure of disulfide-crosslinked S. cerevisiae Hrd1 dimer bound to one copy of Hrd3 in MSP1D1 nanodisc
Method: single particle / : Pisa R, Rapoport TA

PDB-9z0e:
Structure of disulfide-crosslinked S. cerevisiae Hrd1 dimer bound to one copy of Hrd3 in MSP1D1 nanodisc
Method: single particle / : Pisa R, Rapoport TA

EMDB-47522:
Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs
Method: single particle / : He F, Skiniotis G

PDB-9e51:
Cryo-EM structure of human LPHN2 (ADGRL2)/G13 complex in lipid nanodiscs
Method: single particle / : He F, Skiniotis G

EMDB-50546:
Cryo-EM structure of Influenza B/Washington/02/2019 virus hemagglutinin in complex with single-domain antibody hVHH-69.
Method: single particle / : Felix J, Matthys A, Savvides SN, Saelens X

EMDB-50547:
Cryo-EM structure of Influenza B/Washington/02/2019 virus neuraminidase in complex with single-domain antibody hVHH-525.
Method: single particle / : Felix J, Matthys A, Savvides SN, Saelens X

PDB-9fm1:
Cryo-EM structure of Influenza B/Washington/02/2019 virus hemagglutinin in complex with single-domain antibody hVHH-69.
Method: single particle / : Felix J, Matthys A, Savvides SN, Saelens X

PDB-9fm2:
Cryo-EM structure of Influenza B/Washington/02/2019 virus neuraminidase in complex with single-domain antibody hVHH-525.
Method: single particle / : Felix J, Matthys A, Savvides SN, Saelens X

EMDB-45424:
PN-SIA49 Fab fragment in complex with the Y2 COBRA hemagglutinin
Method: single particle / : Nagashima KA, Mousa JJ

EMDB-51951:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-51952:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC5a) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9h93:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9h94:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC5a) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-19547:
PAO1 wild-type ribosome, R, reference map
Method: single particle / : Mesa P, Montoya G

EMDB-50064:
Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50066:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50112:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-50176:
Poliovirus type 1 (strain Mahoney) stabilised virus-like particle (PV1 SC6b) in complex with GPP3 and GSH.
Method: single particle / : Bahar MW, Nasta V, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

EMDB-50189:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a mammalian expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-50199:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from an insect cell expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9eyy:
Poliovirus type 1 (strain Mahoney) native conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9ez0:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a yeast expression system.
Method: single particle / : Bahar MW, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9f0k:
Poliovirus type 1 (strain Mahoney) expanded conformation stabilised virus-like particle (PV1 SC6b) from a mammalian expression system
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9f3q:
Poliovirus type 1 (strain Mahoney) stabilised virus-like particle (PV1 SC6b) in complex with GPP3 and GSH.
Method: single particle / : Bahar MW, Nasta V, Sherry L, Stonehouse NJ, Rowlands DJ, Fry EE, Stuart DI

PDB-9f59:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from a mammalian expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

PDB-9f5p:
Poliovirus type 2 (strain MEF-1) stabilised virus-like particle (PV2 SC6b) from an insect cell expression system.
Method: single particle / : Bahar MW, Porta C, Fry EE, Stuart DI

EMDB-50034:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-50035:
SARS-CoV-2 M protein dimer (long form) in complex with Fab-E and incubated with CIM-834
Method: single particle / : Debski-Antoniak O, Hurdiss DL

PDB-9exa:
SARS-CoV-2 M protein dimer (short form) in complex with Fab-B and CIM-834
Method: single particle / : Debski-Antoniak OJ, Hurdiss DL

EMDB-19011:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-19012:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8u:
Human PADI4 in complex with cyclic peptide PADI4_3
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

PDB-8r8v:
Human PADI4 in complex with cyclic peptide PADI4_11
Method: single particle / : Benton DJ, Bertran MT, Walport LJ

EMDB-43119:
The secreted adhesin EtpA of Enterotoxigenic Escherichia coli in complex with the mouse mAb 1G05
Method: single particle / : Berndsen ZT, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more