[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 526 items for (author: oki & h)

EMDB-48324:
Structure of the bacteriophage T4 portal-neck-tail complex
Method: single particle / : Fokine A, Zhu J, Klose T, Vago F, Arnaud C, Wang Z, Khare B, Rossmann MG, Chen Z, Sun L, Fang Q, Kuhn R, Rao VB

PDB-9mkb:
Structure of the bacteriophage T4 portal-neck-tail complex
Method: single particle / : Fokine A, Zhu J, Klose T, Vago F, Arnaud C, Wang Z, Khare B, Rossmann MG, Chen Z, Sun L, Fang Q, Kuhn R, Rao VB

EMDB-62816:
E. coli MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-63586:
E. coli MaeB holo form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-63599:
E. coli MaeB acetyl-CoA bound form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9l4n:
E. coli MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9m2i:
E. coli MaeB holo form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9m35:
E. coli MaeB acetyl-CoA bound form ME domain dimer
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62633:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62634:
Structure of human B0AT1-ACE2 complex with compound3
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62635:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62627:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62628:
Structure of human B0AT1-ACE2 complex with compound 2
Method: single particle / : Hiraizumi M, Miyaguchi I

EMDB-62629:
Structure of human B0AT1-ACE2 complex with compound3
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62630:
Structure of human B0AT1-ACE2
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62631:
Inward-open Structure of human B0AT1
Method: single particle / : Imazu T, Miyaguchi I, Hiraizumi M

EMDB-62632:
Structure of human B0AT1-ACE2 complex with compound1
Method: single particle / : Imazu T, Miyaguchi I

EMDB-62540:
E. coli MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62541:
B. bacteriovorus MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-62542:
B. bacteriovorus MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9krt:
E. coli MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9kru:
B. bacteriovorus MaeB holo form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

PDB-9krv:
B. bacteriovorus MaeB acetyl-CoA bound form
Method: single particle / : Sassa M, Yamato H, Tanino H, Fukuda Y, Inoue T

EMDB-66460:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

PDB-9x1h:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Method: single particle / : Kawauchi H, Adrian H, Gupta G, Koga H, Fujii T, Fukumura T, Ishino S, Irie M, Torizawa T

EMDB-53046:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qe2:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-60059:
Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Ito T, Suzuki T

EMDB-54802:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

EMDB-54805:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

EMDB-54809:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

EMDB-54827:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

EMDB-54883:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

EMDB-54923:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

PDB-9se5:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

PDB-9sea:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

PDB-9seg:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

PDB-9sfl:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

PDB-9sh0:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

PDB-9si1:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

EMDB-51464:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

EMDB-51501:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

EMDB-52489:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

PDB-9gne:
CryoEM structure of mammalian AAP in complex with acetyl-alanyl-chloromethylketone
Method: single particle / : Kiss-Szeman AJ, Jakli I, Hosogi N, Banoczi Z, Harmat V, Memyhard DK, Perczel A

PDB-9gou:
Cryo-EM structure of acylaminoacyl-peptidase in complex with dichlorvos
Method: single particle / : Kiss-Szeman AJ, Traore D, Jakli I, Harmat V, Menyhard DK, Perczel A

PDB-9hxq:
Cryo-EM structure of acylaminoacyl peptidase (AAP) in covalent complex with inhibitor AEBSF
Method: single particle / : Kiss-Szeman AJ, Menyhard DK, Harmat V, Perczel A

EMDB-39666:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

PDB-8yy4:
Kinesin-14 with AlF3 bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Hagio H, Endow SA, Nitta R

EMDB-39664:
Kinesin-14 in nucleotide-free state bound to 13 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

EMDB-39665:
Kinesin-14 in nucleotide-free state bound to 14 PF Microtubule
Method: helical / : Shibata S, Imasaki T, Shigematsu H, Endow SA, Nitta R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more