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Showing all 50 items for (author: nishimoto & m)

EMDB-62386:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62453:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62454:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62535:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62671:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-62679:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kkf:
Structure of the human 40S ribosome complexed with HCV IRES and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn5:
Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kn6:
Structure of the HCV IRES-dependent pre-48S translation initiation complex with eIF1A, eIF5B, and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9krp:
Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzu:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (non-rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

PDB-9kzx:
Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
Method: single particle / : Iwasaki W, Kashiwagi K, Sakamoto A, Nishimoto M, Takahashi M, Machida K, Imataka H, Matsumoto A, Shichino Y, Iwasaki S, Imami K, Ito T

EMDB-35634:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35635:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35636:
Wheat 40S ribosome in complex with a tRNAi and eIF2
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35637:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-35638:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip8:
Wheat 80S ribosome stalled on AUG-Stop boron dependently
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ip9:
Wheat 40S ribosome in complex with a tRNAi
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipa:
Wheat 80S ribosome stalled on AUG-Stop boron dependently with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

PDB-8ipb:
Wheat 80S ribosome pausing on AUG-Stop with cycloheximide
Method: single particle / : Yokoyama T, Tanaka M, Saito H, Nishimoto M, Tsuda K, Sotta N, Shigematsu H, Shirouzu M, Iwasaki S, Ito T, Fujiwara T

EMDB-31472:
eIF2B-SFSV NSs
Method: single particle / : Kashiwagi K, Ito T

PDB-7f64:
eIF2B-SFSV NSs
Method: single particle / : Kashiwagi K, Ito T

EMDB-31474:
eIF2B-SFSV NSs-1-eIF2
Method: single particle / : Kashiwagi K, Ito T

EMDB-31475:
eIF2B-SFSV NSs-2-eIF2
Method: single particle / : Kashiwagi K, Ito T

EMDB-32023:
eIF2B-SFSV NSs C2-imposed
Method: single particle / : Kashiwagi K, Ito T

PDB-7f66:
eIF2B-SFSV NSs-1-eIF2
Method: single particle / : Kashiwagi K, Ito T

PDB-7f67:
eIF2B-SFSV NSs-2-eIF2
Method: single particle / : Kashiwagi K, Ito T

PDB-7vlk:
eIF2B-SFSV NSs C2-imposed
Method: single particle / : Kashiwagi K, Ito T

EMDB-30568:
eIF2B-eIF2(aP), aPg complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30569:
eIF2B-eIF2(aP), aP2 complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30570:
eIF2B-eIF2(aP), aP1 complex
Method: single particle / : Kashiwagi K, Ito T

EMDB-30571:
eIF2B apo
Method: single particle / : Kashiwagi K, Ito T

PDB-7d43:
eIF2B-eIF2(aP), aPg complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d44:
eIF2B-eIF2(aP), aP2 complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d45:
eIF2B-eIF2(aP), aP1 complex
Method: single particle / : Kashiwagi K, Ito T

PDB-7d46:
eIF2B apo
Method: single particle / : Kashiwagi K, Ito T

PDB-6k71:
eIF2 - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

PDB-6k72:
eIF2(aP) - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9699:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure i)
Method: single particle / : Yokohama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9701:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9702:
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9703:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9704:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome, rotated (Structure v)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip5:
Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip6:
Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

PDB-6ip8:
Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv)
Method: single particle / : Yokoyama T, Shigematsu H, Shirouzu M, Imataka H, Ito T

EMDB-9840:
eIF2 - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9841:
eIF2(aP) - eIF2B complex
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

EMDB-9842:
eIF2 - eIF2B (2 molecule)
Method: single particle / : Kashiwagi K, Yokoyama T, Ito T

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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Jul 5, 2019. Downlodablable text data

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Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMN Search / EMN Statistics

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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