[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 27,134 items for (author: ni & t)

EMDB-51662:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-51663:
Subtomogram average of three fascins in complex with two actin filaments
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-52503:
Cryo-tomogram of fascin-actin bundles reconstituted in vitro
Method: electron tomography / : Song X, Corbalan-Garcia S, Huiskonen JT

PDB-9gxi:
Subtomogram average of fascin-actin complex
Method: subtomogram averaging / : Song X, Corbalan-Garcia S, Huiskonen JT

EMDB-49635:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49636:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49637:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (consensus map)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npx:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9npy:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-53511:
SpCas9 with computationally designed SpCas9_b10 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-45076:
Structure of Sialyl transferase from Pasturella Multocida
Method: single particle / : Subramanian R, Dhanabalan K

EMDB-52642:
Consensus map of the 70S ribosome of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52647:
Focused refinement of the large ribosomal subunit of a MLSb sensitive S. aureus strain "KES34" in complex with solithromycin
Method: single particle / : Rivalta A, Yonath A

EMDB-52648:
Postprocessed map of the focused refinement of the small ribosomal subunit body of a MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-52649:
Postprocessed map of the focused refinement of the small ribosomal subunit head of the MLSb sensitive S. aureus strain "KES34"
Method: single particle / : Rivalta A, Yonath A

EMDB-45041:
Single subunit of Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

EMDB-45042:
Two-subunit asymmetric unit of Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

EMDB-45043:
Filamentous Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

PDB-9byp:
Single subunit of Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

PDB-9byq:
Two-subunit asymmetric unit of Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

PDB-9byr:
Filamentous Epstein-Barr virus annealase BALF2 ssDNA-annealing complex
Method: single particle / : Nicholls J, Tolun G, Brewster J

EMDB-70416:
Cryo-EM Structure of Human HIF-2a-ARNT Complexed on 20-bp HRE
Method: single particle / : Xu X, Closson JD, Zhang M, Gardner KH

EMDB-70418:
Dimer of HIF-2a-ARNT Heterodimers Complexed on 51-bp HRE/HAS
Method: single particle / : Closson JD, Xu X, Gardner KH

EMDB-70443:
Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
Method: single particle / : Closson JD, Tiyani TT, Xu X, Gardner KH

PDB-9ofu:
Dimer of HIF-1a-ARNT Heterodimers Complexed on 52-bp HRE/HAS
Method: single particle / : Closson JD, Tiyani TT, Xu X, Gardner KH

EMDB-70353:
Clone 2.1 Fab in complex with chicken IgY CH2 domain (local refinement)
Method: single particle / : Ozorowski G, Alkutkar T, Ward AB

EMDB-49366:
Tuna P-glycoprotein Apo Conformation 1
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G, Center for Structures of Membrane Proteins (CSMP)

EMDB-49367:
Tuna P-glycoprotein Apo Conformation 2
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

EMDB-49368:
Tuna P-glycoprotein Apo Conformation 3
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

EMDB-49369:
Tuna P-glycoprotein Apo Conformation 4
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

EMDB-49370:
Tuna P-glycoprotein bound to DDT
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

PDB-9nfi:
Tuna P-glycoprotein Apo Conformation 1
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G, Center for Structures of Membrane Proteins (CSMP)

PDB-9nfj:
Tuna P-glycoprotein Apo Conformation 2
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

PDB-9nfk:
Tuna P-glycoprotein Apo Conformation 3
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

PDB-9nfl:
Tuna P-glycoprotein Apo Conformation 4
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

PDB-9nfm:
Tuna P-glycoprotein bound to DDT
Method: single particle / : Young MA, Rees SD, Nicklisch SCT, Stowell M, Hamdoun A, Chang G

EMDB-51902:
Cryo-EM structure of lipid-bound human myoferlin (25 mol% DOPS/5 mol% PI(4,5)P2 nanodisc)
Method: single particle / : Cretu C, Moser T, Preobraschenski J

EMDB-53222:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

EMDB-53225:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 2 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-53226:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (25 mol% DOPS, 5 mol% PI(4,5)P2 and 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

EMDB-53229:
Human myoferlin (1-1997) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

EMDB-53233:
Human dysferlin (1-2017) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

PDB-9h6x:
Cryo-EM structure of lipid-bound human myoferlin (25 mol% DOPS/5 mol% PI(4,5)P2 nanodisc)
Method: single particle / : Cretu C, Moser T, Preobraschenski J

PDB-9qkv:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

PDB-9qle:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 2 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qlf:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (25 mol% DOPS, 5 mol% PI(4,5)P2 and 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

PDB-9qln:
Human myoferlin (1-1997) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

PDB-9qls:
Human dysferlin (1-2017) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

EMDB-46569:
Structure of HKU5-20s spike glycoprotein
Method: single particle / : Wu Z, Fan C, Bjorkman PJ

PDB-9d4t:
Structure of HKU5-20s spike glycoprotein
Method: single particle / : Wu Z, Fan C, Bjorkman PJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more