[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 113 items for (author: nagaraja & v)

EMDB-61190:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61205:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61206:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j6z:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7k:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

PDB-9j7l:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-45876:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45879:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45881:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-45880:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein (transmembrane domain)
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42786:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42789:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42791:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-42817:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxv:
Consensus olfactory receptor consOR51 in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uxy:
Consensus olfactory receptor consOR1 bound to L-menthol and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uy0:
Consensus olfactory receptor consOR2 bound to S-carvone and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

PDB-8uyq:
Consensus olfactory receptor consOR4 bound to 2-methylthiazoline and in complex with mini-Gs trimeric protein
Method: single particle / : Billesboelle CB, Del Torrent CL, Manglik A

EMDB-41346:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41359:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41360:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41361:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41362:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tkc:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-b.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl2:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl3:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-d.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl4:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO DJ85-e.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

PDB-8tl5:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Pletnev S, Hoyt F, Fischer E, Kwong P

EMDB-41766:
CryoEM structure of D2 dopamine receptor in complex with GoA KE mutant, scFv16, and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

EMDB-41776:
CryoEM structure of D2 dopamine receptor in complex with GoA KE mutant and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

PDB-8tzq:
CryoEM structure of D2 dopamine receptor in complex with GoA KE Mutant, scFv16, and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

PDB-8u02:
CryoEM structure of D2 dopamine receptor in complex with GoA KE mutant and dopamine
Method: single particle / : Krumm BE, Kapolka NJ, Fay JF, Roth BL

EMDB-41426:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41438:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

EMDB-41440:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

EMDB-41459:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD, Xu J

PDB-8tnu:
Cryo-EM structure of TRNM-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8to7:
Cryo-EM structure of HERH-b*01 Fab in complex with HIV-1 Env trimer BG505.DS SOSIP
Method: single particle / : Roark RS, Hoyt F, Hansen B, Fischer E, Shapiro LS, Kwong PD

PDB-8to9:
Cryo-EM structure of TRNM-f*01 Fab in complex with HIV-1 Env trimer ConC SOSIP
Method: single particle / : Roark RS, Morano NC, Shapiro LS, Kwong PD

PDB-8top:
Cryo-EM structure of HIV-1 Env BG505 DS-SOSIP in complex with antibody GPZ6-b.01 targeting the fusion peptide
Method: single particle / : Zhou T, Morano NC, Roark RS, Kwong PD

EMDB-41309:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-c.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

EMDB-41310:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L, Ho DD

PDB-8tjr:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO HERH-a.01 FAB
Method: single particle / : Morano NC, Hoyt F, Hansen B, Fischer E, Shapiro L

PDB-8tjs:
CRYO-EM STRUCTURE OF HIV-1 BG505DS-SOSIP.664 ENV TRIMER BOUND TO GPZ6-a.01 FAB
Method: single particle / : Morano NC, Becker JE, Shapiro L

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more