[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 97 items for (author: may & mb)

EMDB-73285:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73287:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75391:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75392:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qq:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qr:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp6:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp8:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-72250:
Cryo-EM structure of 70S ribosome in the classical state (A/A, P/P, E,E) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72251:
Cryo-EM structure of 70S ribosome in the classical state (P/P, E/E) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72255:
Cryo-EM structure of 70S ribosome bound to RaiA imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72257:
Cryo-EM structure of a tmRNA-rescue complex imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72271:
Cryo-EM structure of 70S ribosome bound to EF-Tu imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72291:
Cryo-EM structure of 30S ribosome in a H44 active state imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72292:
Cryo-EM structure of 30S ribosome in a H44 inactive-dislodged state imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72315:
Cryo-EM structure of 30S ribosome in a H44 inactive-unresolved state imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72316:
Cryo-EM structure of 30S ribosome in a closed conformation with tRNA bound imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72324:
Cryo-EM structure of 30S ribosome with tRNA bound in an open conformation imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72344:
Cryo-EM structure of 50S ribosome (class I) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72346:
Cryo-EM structure of large ribosomal subunit (class 2) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72349:
Cryo-EM structure of large ribosomal subunit (class 3) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72350:
Cryo-EM structure of large ribosomal subunit (class 5) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72354:
Cryo-EM structure of large ribosomal subunit (class A1) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72355:
Cryo-EM structure of large ribosomal subunit (class A2) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72357:
Cryo-EM structure of 70S ribosome in the hybrid state (A/P*, P/E) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72360:
Cryo-EM structure of large ribosomal subunit (class C1) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72363:
Cryo-EM structure of large ribosomal subunit (class B2) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72364:
Cryo-EM structure of large ribosomal subunit (class B1) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72365:
Cryo-EM structure of large ribosomal subunit (class 4) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72366:
Cryo-EM structure of large ribosomal subunit (class 6) imaged in a cell lysate
Method: single particle / : May MB, Lopez-Perez GS, Davis JH

EMDB-72030:
Cryo-EM structure of EF-G and RaiA simultaneously bound to an E. coli ribosome imaged in a cell lysate
Method: single particle / : May MB, Davis JH

EMDB-72655:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72732:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-72733:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9y7h:
Gb1g2 crosslinked to PLCb3
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yao:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

PDB-9yap:
Gbg crosslinked to PLCb3 - second conformation
Method: single particle / : Fisher IJ, Lyon AM

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-17015:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

PDB-8ooh:
Cryo-EM map of the focused refinement of the subfamily III haloalkane dehalogenase from Haloferax mediterranei dimer forming hexameric assembly.
Method: single particle / : Polak M, Novacek J, Chmelova K, Marek M

EMDB-28013:
Cryo-EM structure of the Glutaminase C core filament (fGAC)
Method: single particle / : Ambrosio AL, Dias SM, Quesnay JE, Portugal RV, Cassago A, van Heel MG, Islam Z, Rodrigues CT

PDB-8ec6:
Cryo-EM structure of the Glutaminase C core filament (fGAC)
Method: single particle / : Ambrosio AL, Dias SM, Quesnay JE, Portugal RV, Cassago A, van Heel MG, Islam Z, Rodrigues CT

EMDB-16998:
Cryo-EM structure of subfamily III haloalkane dehalogenase DhmeA from Haloferax mediterranei
Method: single particle / : Marek M, Novacek J, Polak M, Chmelova K

EMDB-28092:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-093
Method: single particle / : Callaway H, Li H, Yu X, Shek J, Saphire EO

EMDB-28090:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-040
Method: single particle / : Li H, Callaway H, Yu X, Shek J, Saphire EO

EMDB-28091:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-045
Method: single particle / : Li H, Callaway H, Yu X, Shek J, Saphire EO

EMDB-28093:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-156
Method: single particle / : Shek J, Callaway H, Li H, Yu X, Saphire EO

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more