[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 808 items for (author: luca & v)

EMDB-55652:
Composite map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55653:
Consensus map of LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55654:
Focused map of LRRC58-CDO1 region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55655:
Focused map of CUL2-LRRC58-EloC interface region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55656:
Focused map of ARIH1-Ub region from LRRC58- EloB/C-CDO1 in complex with neddylated CUL2-RBX1-ARIH1-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55658:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55659:
Consensus Map of LRRC58-ELOB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55660:
Focused map of LRRC58-CDO1 region from LRRC58-ELOB/C-CDO1-CUL5-RBX2-NEDD8-ARIH2-UB
Method: single particle / : Stier L, Andree GA, Schulman BA

PDB-9t7v:
Structure of LRRC58-EloB/C-CDO1 in complex with NEDD8-CUL5-RBX2-ARIH2-Ub
Method: single particle / : Stier L, Andree GA, Schulman BA

EMDB-55389:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - IsdH:Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

PDB-9szw:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - IsdH:Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

EMDB-55478:
Human carboxyhemoglobin bound to full-length Staphylococcus aureus IsdH - 1IsdH:2Hbdim complex
Method: single particle / : Buoli Comani V, De Bei O, Luisi BF, Bettati S

EMDB-56971:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

PDB-28yj:
Molecular basis of ZPD homopolymerization: cryo-EM structure of a native vertebrate egg coat filament
Method: single particle / : Banjara S, Okumura H, Jovine L

EMDB-70083:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70084:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-70086:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3v:
Human 80S ribosome stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3w:
Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

PDB-9o3y:
Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
Method: single particle / : Sauer PV, Schuller AP, Hamann LG

EMDB-54793:
Structure of Neddylated CUL5 C-terminal region-RBX2-ARIH2~L3A2-1~Ub
Method: single particle / : Schulman BA, Du J

EMDB-54794:
Structure of RBR E2 variant binding to CUL5-RBX2 bound ARIH2
Method: single particle / : Schulman BA, Du J

EMDB-54795:
Cryo-EM map of focus refined ASB9-Elob/C-CKB bound to Nedd8-CUL5-RBX2-ARIH2-L3A2-1
Method: single particle / : Schulman BA, Du J

EMDB-54892:
consensus map of Neddylated CUL5-ARIH2-L3A2-1 bound to ASB9-EloB/C-CKB
Method: single particle / : Schulman BA, Du J

EMDB-54893:
Focus refined map of Neddylated CUL5-ARIH2-L3A2-1 bound to ASB9-EloB/C-CKB, focus refined on ARIH2-L3A2-1
Method: single particle / : Schulman BA, Du J

EMDB-54933:
Consensus Map of Neddylated CUL5 C-terminal region-RBX2-ARIH2~L3A2-1~Ub
Method: single particle / : Schulman BA, Du J

EMDB-54934:
Focus refined map of Neddylated CUL5 C-terminal region-RBX2-ARIH2~L3A2-1~Ub
Method: single particle / : Schulman BA, Du J

PDB-9sdx:
Structure of RBR binding E2 variant crosslinked with NEDD8-CUL5-RBX2 bound ARIH2 and Ub
Method: single particle / : Schulman BA, Du J

PDB-9sdy:
Structure of RBR E2 variant binding to CUL5-RBX2 bound ARIH2
Method: single particle / : Schulman BA, Du J

EMDB-67283:
C1 Symmetry of DNA tesseract
Method: single particle / : Shiu SCC

EMDB-67284:
Octahedral Symmetry of DNA Tesseract
Method: single particle / : Shiu SCC

EMDB-48183:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48184:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48185:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48186:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-48187:
Antibody fragments from mAb21 and mAb475 bound to the fimbrial tip protein, FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-71842:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me4:
Antibody fragments from mAb475 and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me5:
Antibody fragments from mAb824 and mAb926 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me6:
Antibody fragments from mAb21, mAb475, and mAb824 bound to the adhesin protein FimH
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9me7:
Antibody fragments from mAb21 and mAb824 bound to the adhesin protein FimH containing alpha-methyl mannose
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

PDB-9ptm:
Antibody fragment from mAb824 bound to the adhesin protein FimH.
Method: single particle / : Hvorecny KL, Magala P, Klevit RE, Kollman JM

EMDB-47174:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

PDB-9dur:
Cryo-EM Structure of CRBN:dHTC1:ENL YEATS
Method: single particle / : Cheong H, Hunkeler M, Fischer ES

EMDB-54546:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alpha2beta):Hbtet complex
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54563:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54565:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54566:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54567:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54585:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alphabeta2):Hbtet complex
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more