[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 168 items for (author: lopez & hr)

EMDB-72526:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

PDB-9y61:
Cryo-EM structure of ternary complex NSD2-PWWP1:CRBN:DDB1 in complex with NSD2-LDD, an LDD degrader
Method: single particle / : Zhu J, Pagarigan BE, Fang W

EMDB-54532:
Cryo-EM structure of Gephyrin in complex with Darpin 27F3, revealing linker-E domain interactions
Method: single particle / : Ortiz-Lopez D, Hove T, Schindelin H, Boettcher B

EMDB-54539:
Gephyrin E-Domain dimer of dimers - Consensus Map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54540:
Cryo-EM structure of Gephyrin E domain in complex with Darpin 27F3
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54544:
Gephyrin E-Domain dimer of dimers - local refinement of dimer A
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54545:
Gephyrin E-Domain dimer of dimers - local refinement of dimer B
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-54551:
Gephyrin dimer of dimers - combined CryoEM map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

PDB-9s3f:
Cryo-EM structure of Gephyrin in complex with Darpin 27F3, revealing linker-E domain interactions
Method: single particle / : Ortiz-Lopez D, Hove T, Schindelin H, Boettcher B

PDB-9s3m:
Cryo-EM structure of Gephyrin E domain in complex with Darpin 27F3
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

PDB-9s3t:
Gephyrin dimer of dimers - combined CryoEM map
Method: single particle / : Ortiz-Lopez D, Hove T, Boettcher B, Schindelin H

EMDB-75498:
KpSwz DUF4062 (Hexamer, catalytic mutant E97A)
Method: single particle / : Osinski A, Lopez VA, Tagliabracci VS

EMDB-75622:
KpSwz in complex with bacteriophage Bas14 Portal
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75626:
KpSwz DUF4062 (Tetramer, catalytic mutant E97A)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75638:
Human Brain RNA Vault Shoulder bound to ADPR, focused refinement (EMPIAR-10766)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75642:
RNA Vault waist region, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75647:
RNA Vault shoulder region with BAD bound, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75656:
RNA Vault with BAD bound (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75664:
RNA Vault cap (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75731:
RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75732:
RNA Vault Shoulder with ADPR bound, compact conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75733:
RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75735:
RNA Vault bound to PARP4 MINT, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75744:
RNA Vault intermediate conformation (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-75745:
RNA Vault extended conformation (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-10wc:
KpSwz DUF4062 (Hexamer, catalytic mutant E97A)
Method: single particle / : Osinski A, Lopez VA, Tagliabracci VS

PDB-11cq:
KpSwz in complex with bacteriophage Bas14 Portal
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11cv:
KpSwz DUF4062 (Tetramer, catalytic mutant E97A)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11dr:
Human Brain RNA Vault Shoulder bound to ADPR, focused refinement (EMPIAR-10766)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11dv:
RNA Vault waist region, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11ee:
RNA Vault shoulder region with BAD bound, focused refinement (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11eq:
RNA Vault with BAD bound (MVP/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11fh:
RNA Vault cap (MVP/PARP4/TEP1 sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jb:
RNA Vault with ADPR bound (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jc:
RNA Vault Shoulder with ADPR bound, compact conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jd:
RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

PDB-11jf:
RNA Vault bound to PARP4 MINT, focused refinement (MVP/PARP4/TEP1 NADP sample)
Method: single particle / : Osinski A, Tagliabracci VS

EMDB-74399:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

PDB-9zld:
Cryo-EM structure of hepatic amyloid fibril from a variant ATTRV122delta, single filament morphology
Method: helical / : Nguyen BA, Ahmed Y, Saelices L

EMDB-71896:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-71897:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-71898:
Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

PDB-9pvy:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I L90P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

PDB-9pvz:
Cryo-EM structure of cardiac amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

PDB-9pw3:
Cryo-EM structure of renal amyloid fibril from a variant apolipoprotein A-I R173P amyloidosis patient
Method: helical / : Nguyen BA, Saelices L

EMDB-49601:
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant Alect2-I40V amyloidosis patient
Method: helical / : Nguyen B, Saelices L

EMDB-49623:
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant ALECT2-I40V amyloidosis patient
Method: helical / : Nguyen B, Saelices L

EMDB-49624:
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant ALECT2-I40V amyloidosis patient
Method: helical / : Nguyen B, Saelices L

PDB-9non:
Cryo-EM structure of amyloid fibril isolated from the kidney of a variant Alect2-I40V amyloidosis patient
Method: helical / : Nguyen B, Saelices L

EMDB-55722:
Tilvestamab Fab bound to the anti-Fab nanobody
Method: single particle / : Lopez AJ, Christakou E, Kursula P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more