[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 113 items for (author: lopez & hr)

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-46479:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46481:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46482:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46487:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46495:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46496:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d21:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d23:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d24:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d27:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d2g:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-51500:
Partial (48mer) encapsulin shell assembly from Mycobacterium tuberculosis
Method: single particle / : Lewis CJ, Berger C, Ravelli RBG

EMDB-52340:
Partial (52mer) encapsulin shell assembly from Mycobacterium tuberculosis
Method: single particle / : Lewis CJ, Berger C, Ravelli RBG

EMDB-52341:
Partial (54mer) encapsulin shell assembly from Mycobacterium tuberculosis
Method: single particle / : Lewis CJ, Berger C, Ravelli RBG

EMDB-44641:
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Albacete-Albacete L, Ramakrishnan V, S Fraser C

EMDB-44671:
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Yifei D, Albacete-Albacete L, Ramakrishnan V, S Fraser C

PDB-9bkd:
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Albacete-Albacete L, Ramakrishnan V, SFraser C

PDB-9bln:
The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Zuber P, Yifei D, Albacete-Albacete L, Ramakrishnan V, S Fraser C

EMDB-16103:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16104:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16105:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bl8:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8bla:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8blb:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-19005:
structure of the GLMP/MFSD1 complex
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-19006:
Lysosomal peptide transporter
Method: single particle / : Jungnickel KEJ, Loew C

EMDB-15689:
Mouse serotonin 5-HT3A receptor in complex with vortioxetine
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-15699:
Human serotonin 5-HT3A receptor (apo, resting conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8aw2:
Mouse serotonin 5-HT3A receptor in complex with vortioxetine
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8axd:
Human serotonin 5-HT3A receptor (apo, resting conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-17297:
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Fraser CS, Ramakrishnan V

PDB-8oz0:
Structure of a human 48S translation initiation complex with eIF4F and eIF4A
Method: single particle / : Brito Querido J, Sokabe M, Diaz-Lopez I, Gordiyenko Y, Fraser CS, Ramakrishnan V

EMDB-29013:
96nm doublet microtubule repeat from wild type mouse sperm
Method: subtomogram averaging / : Hwang JY, Chai P, Nawaz S

EMDB-28606:
96nm doublet microtubule repeat from LRRC23-KO mouse sperm
Method: subtomogram averaging / : Hwang JY, Chai P, Nawaz S

EMDB-16555:
Mouse serotonin 5-HT3A receptor in complex with PZ-1922
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16557:
Mouse serotonin 5-HT3A receptor in complex with PZ-1939
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8cc6:
Mouse serotonin 5-HT3A receptor in complex with PZ-1922
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8cc7:
Mouse serotonin 5-HT3A receptor in complex with PZ-1939
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-28189:
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-28190:
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-14438:
VAR2 complex with PAM1.4
Method: single particle / : Raghavan SSR, Wang KT

EMDB-14446:
VAR2CSA APO
Method: single particle / : Raghavan SSR, Wang KT

PDB-7z12:
VAR2 complex with PAM1.4
Method: single particle / : Raghavan SSR, Wang KT

PDB-7z1h:
VAR2CSA APO
Method: single particle / : Raghavan SSR, Wang KT

EMDB-13164:
Cryo-EM structure of encapsulin from Mycobacterium tuberculosis
Method: single particle / : Lewis CJ, Berger C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more