[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 13,903 items for (author: lin & z)

EMDB-75660:
Capsid Subtomogram Average From NL4.3:PR(D25N) Immature HIV-1 Virions
Method: subtomogram averaging / : Preece B, Saffarian S

EMDB-43082:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

PDB-8v9t:
Ecoli DnaB helicase and Phage Lambda loader P with ADP-Mg in a 6:5 stoichiometry ratio
Method: single particle / : Shatarupa A, Brown D, Olinares PDB, Chase J, Isiorho E, Chait BT, Jeruzalmi D

EMDB-64386:
Focus-refined map of C. elegans piezo channel
Method: single particle / : Liu Y, Guo YR

EMDB-53847:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

PDB-9r90:
Cryo-EM structure of human ATP citrate lyase in complex with inhibitor EVT0185-CoA
Method: single particle / : Verstraete K, Verschueren K, Savvides SN, Steinberg GR

EMDB-63977:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

PDB-9ua3:
Cryo-EM structure of neddylated CUL2-RBX1-FEM1C-ELOB-ELOC
Method: single particle / : Zhou H, Xu C

EMDB-52849:
Apo-MtbKu , not bound to DNA
Method: single particle / : Chaplin AK, Zahid S

PDB-9ig8:
Apo-MtbKu , not bound to DNA
Method: single particle / : Chaplin AK, Zahid S

EMDB-65611:
Structure of Csm6 from Actinomyces procaprae in complex with cyclic penta-adenylate
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

PDB-9w3w:
Structure of Csm6 from Actinomyces procaprae in complex with cyclic penta-adenylate
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

EMDB-65609:
Structure of Csm6 from Actinomyces procaprae
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

PDB-9w3u:
Structure of Csm6 from Actinomyces procaprae
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

EMDB-52788:
Cryo-EM consensus map of prefusion SARS-CoV-2 spike (RBDs: 1 up & 2 down) bound to RBD-targeting MO176-117 antibody
Method: single particle / : Schulte T, Wallden W, Andrell J, Ohlin M

EMDB-52789:
Cryo-EM focus map of prefusion SARS-CoV-2 spike (RBDs: 1 up & 2 down) bound to RBD-targeting MO176-117 antibody
Method: single particle / : Schulte T, Wallden W, Andrell J, Ohlin M

EMDB-52790:
Cryo-EM consensus map of prefusion SARS-CoV-2 spike (RBDs: 2 up & 1 down) bound to RBD-targeting MO176-117 antibody
Method: single particle / : Schulte T, Wallden W, Andrell J, Ohlin M

EMDB-52791:
Cryo-EM focus map of prefusion SARS-CoV-2 spike (RBDs: 2 up & 1 down) bound to RBD-targeting MO176-117 antibody
Method: single particle / : Schulte T, Wallden W, Andrell J, Ohlin M

EMDB-55621:
2'-fluoro-modified pyrimidine (FY) RNA aptamer binding to the receptor binding domain (RBD) of the SARS-CoV-2 spike protein. (focus map: PXT origami 'pointer')
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergious NH

EMDB-55622:
2'-fluoro-modified pyrimidine (FY) RNA aptamer binding to the receptor binding domain (RBD) of the SARS-CoV-2 spike protein. (focus map: Spike core)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergious NH

EMDB-55623:
2'-fluoro-modified pyrimidine (FY) RNA aptamer binding to the receptor binding domain (RBD) of the SARS-CoV-2 spike protein (Full map, no symmetry)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergious NH

EMDB-55624:
2'-fluoro-modified pyrimidine (FY) RNA aptamer binding to the receptor binding domain (RBD) of the SARS-CoV-2 spike protein. (focus map: Spike N-terminal domain (NTD))
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergious NH

EMDB-55625:
2'-fluoro-modified pyrimidine (FY) RNA aptamer binding to the receptor binding domain (RBD) of the SARS-CoV-2 spike protein. (focus map: RBD-aptamer)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergious NH

EMDB-65610:
Structure of Csm6 from Actinomyces procaprae in complex with cyclic hexa-adenylate
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

PDB-9w3v:
Structure of Csm6 from Actinomyces procaprae in complex with cyclic hexa-adenylate
Method: single particle / : Lin Z, Gao H, Shi R, Yang M, Liu Y

EMDB-55626:
3-helix origami tile + Broccoli and Pepper aptamers (3HT-BP) with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-65918:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

PDB-9wey:
Structure of HCMV UL33 in complex with human Gs protein
Method: single particle / : Tsutsumi N, Suzuki S, Nishikawa K, Fujiyoshi Y

EMDB-71798:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71799:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-71800:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr5:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) extended state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr6:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) docked state
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

PDB-9pr7:
Cryo-EM structure of the human inward-rectifier potassium 7.1 channel (Kir7.1) with enantiomer of 17-hydroxyprogesterone caproate
Method: single particle / : Niu Q, Vu S, Zhang R, Fu Z, Lishko PV

EMDB-53787:
Paranemic crossover triangle (PXT) with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-53795:
5-Helix Tile - Twist Corrected (5HT-TC) with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-53803:
6-Helix Bundle - with a Clasp (6HB-C)-monomer with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-71286:
NAC H59-undocked barrel: Ribosome nascent chain complex (Oxa1LdelMTS)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-71287:
NAC H59-docked barrel: Ribosome nascent chain complex (Oxa1LdelMTS)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-54448:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

PDB-9s1f:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

EMDB-64277:
native GluN1/N2B receptor in the fully open state
Method: single particle / : Yu J, Ge JP, Chen JH

EMDB-64278:
native GluN1/N2B receptor in the open state TMD focused map
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64279:
native GluN1/N2A/N2B-s1 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64280:
native GluN1/N2A/N2B-s1-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64281:
native GluN1/N2A/N2B-subtype2 consensus map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64283:
native GluN1/N2A/N2B-S2-TMD focused map in the closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64284:
native GluN1/N2A-subtype 1-TMD focused
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64285:
native GluN1/N2B-subtype1 in closed state
Method: single particle / : Yu J, Xu RS, Ge JP

EMDB-64289:
native GluN1/N2A-subtype2-consensus map
Method: single particle / : Yu J, Xu RS, Ge JP

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more