[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,328 items for (author: lin & cl)

EMDB-55135:
Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55136:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55137:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55139:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55636:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sra:
Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9srb:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9src:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sre:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9t7h:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-73108:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73109:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

EMDB-73110:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymj:
RQd20_wk56_28 Fab in complex with V703-0537_L14 SOSIP and 3BNC117 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9ymk:
RVz20_wk72_08 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Sewall LM, Ozorowski G, Ward AB

PDB-9yml:
RRr20_wk72_07 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-72934:
HCoV-HKU1 C S 2P in complex with H501-008 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72935:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72936:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72937:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72938:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-72939:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygn:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 1, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygo:
HuCoV-HKU1 C S 2P in complex with H501-018 Fab (State 2, global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygp:
HCoV-HKU1 C S 2P in complex with H501-018 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygq:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (global cryoEM)
Method: single particle / : Vasquez S, Barnes CO

PDB-9ygr:
HCoV-HKU1 C S 2P in complex with H501-022 Fab (local cryoEM)
Method: single particle / : Vasquez S, Barnes CO

EMDB-57915:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 1)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57916:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 2)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57918:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 3)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57919:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 4)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57920:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 5)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57921:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 6)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-57922:
Siphohage OE33PA upon binding to its Gram+ host cell surface (view 7)
Method: electron tomography / : Goulet A, Ptchelkine D

EMDB-58149:
Capsid of the Oenococcus oeni phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58150:
Capsid-connector assembly of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58151:
Connector and Major Tail Protein of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58152:
Portal-adaptor asssembly of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58153:
Stopper and tail terminator assembly of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58154:
DNA in the capsid-tail connector of the phage OE33PA (classification focused on the adaptor-stopper region)
Method: single particle / : Goulet A, Cambillau C

EMDB-58155:
DNA in the capsid-tail connector of the phage OE33PA (classification focused on the capsid-portal junction)
Method: single particle / : goulet A, cambillau C

EMDB-58156:
Adhesion device of the phage OE33PA (unsymmetrized 3D reconstruction)
Method: single particle / : Goulet A, Cambillau C

EMDB-58157:
adhesion device (C3 symmetrized reconstruction) of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58158:
C6 symmetrized reconstruction of the adhesion device of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58159:
RBP trimer bound to a monomer of the distal tail protein of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58160:
Part of the tail tube of the phage OE33PA
Method: single particle / : Goulet A, Cambillau C

EMDB-58161:
Conformational variability of the phage OE33PA adhesion device (State 1)
Method: single particle / : Goulet A, Cambillau C

EMDB-58162:
Conformational variability of the phage OE33PA adhesion device (State 2)
Method: single particle / : Goulet A, Cambillau C

PDB-30ys:
Capsid of the Oenococcus oeni phage OE33PA
Method: single particle / : Goulet A, Cambillau C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more