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Showing 1 - 50 of 767 items for (author: lien & y)

EMDB-75979:
Cryo-EM structure of human exportin-1 conjugated with FR-027*
Method: single particle / : Wing CE, Fung HYJ, Chook YM

PDB-11rm:
Cryo-EM structure of human exportin-1 conjugated with FR-027*
Method: single particle / : Wing CE, Fung HYJ, Chook YM

EMDB-52462:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 (dinucleotide-binding pocket mutant Q494Y)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52464:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 (oligomerization mutant R551E)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52468:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 saturated with pdApdG dinucleotide (HEPN active site mutant R502A)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52474:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 saturated with pdGpdG dinucleotide (HEPN active site mutant R502A)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52475:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 saturated with pdCpdG dinucleotide (HEPN active site mutant R502A)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52477:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 co-purified with pdCpdG dinucleotide (HEPN active site mutant R502A)
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52478:
Bacterial antiviral defense protein Ec2ApeA from Escherichia coli strain 2-156-04_S4_C1 saturated with pdCpdG dinucleotide
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52479:
Bacterial antiviral defense protein Ec3ApeA from Escherichia coli strain KK-NP016
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52481:
Putative bacterial antiviral defense protein Thr1ApeA from Thermoactinospora rubra strain YIM 77501
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52482:
Putative bacterial antiviral defense protein Ec4ApeA from Escherichia coli strain 10434wH10
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-52483:
Bacterial antiviral defense protein Ec1ApeA from Escherichia coli strain NCTC8008
Method: single particle / : Sasnauskas G, Juozapaitis J, Puteikiene R, Tamulaitiene G

EMDB-56106:
Human Cardiac Interacting Heads Motif, E525K mutant
Method: single particle / : Lannes L, Kikuti CM, Auguin D, Robert-Paganin J, Houdusse A

EMDB-56107:
Human Cardiac Interacting Heads Motif, Conformation B
Method: single particle / : Kikuti CM, Lannes L, Auguin D, Robert-Paganin J, Houdusse A

EMDB-56108:
Human Cardiac Interacting Heads Motif, Conformation A
Method: single particle / : Kikuti CM, Lannes L, Auguin D, Robert-Paganin J, Houdusse A

PDB-9tpj:
Human Cardiac Interacting Heads Motif, E525K mutant
Method: single particle / : Lannes L, Kikuti CM, Auguin D, Robert-Paganin J, Houdusse A

PDB-9tpk:
Human Cardiac Interacting Heads Motif, Conformation B
Method: single particle / : Kikuti CM, Lannes L, Auguin D, Robert-Paganin J, Houdusse A

PDB-9tpl:
Human Cardiac Interacting Heads Motif, Conformation A
Method: single particle / : Kikuti CM, Lannes L, Auguin D, Robert-Paganin J, Houdusse A

EMDB-53473:
Mouse Ribosome Classical Pre translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qzp:
Mouse Ribosome Classical Pre translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-52524:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

PDB-9hzg:
Ku70/80 bound to WRN-exo
Method: single particle / : Hardwick SW, Zahid S, Chaplin AK, Ropars R, Charbonnier JB

EMDB-56110:
Flat clathrin lattice on endosomes
Method: subtomogram averaging / : Gul M, Hakala M, Moparthi SB, Ganeva I, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A, Kudryashev M

EMDB-56112:
Cryo-electron tomogram of endosomes in HeLa cells
Method: electron tomography / : Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

EMDB-53427:
Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qwt:
Mouse Ribosome RPS15 (uS19) P131S rotated-2 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-72367:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

PDB-9xzn:
Teichoic acid flippase TacF from Streptococcus pneumoniae
Method: single particle / : Cebrero G, Chidananda HA, Denereaz JL, Cester E, Mathew AT, Bhowmik DR, Capitani M, Reymond JL, Kannan N, Veening JW, Mehdipour AR, Perez C

EMDB-53307:
Mouse RPS15 P131 Mutant Ribosome POST translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-53310:
Mouse Ribosome rotated-2 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-53333:
Mouse Ribosome rotated-1 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qql:
Mouse RPS15 P131 Mutant Ribosome POST translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qqp:
Mouse Ribosome rotated-2 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qsa:
Mouse Ribosome rotated-1 PRE state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-53262:
Mouse Ribosome POST translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

PDB-9qoh:
Mouse Ribosome POST translocation state
Method: single particle / : Santo PE, Astier A, Plisson-Chastang C

EMDB-53563:
Non-uniform refine map MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53564:
Focussed map (top) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53565:
Focussed map (bottom) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53566:
Focussed map (middle) MiDAC complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-53567:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

PDB-9r4i:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Method: single particle / : Fairall L, Schwabe JWR

EMDB-54448:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

PDB-9s1f:
Cryo-EM structure of activated retron Eco2 (Ec67)
Method: single particle / : Skorupskaite A, Jasnauskaite M, Grigaitis R, Malinauskaite L, Pausch P

EMDB-55720:
Cryo-EM reconstruction for n-Tr20U.
Method: single particle / : Mehta R, Glatt S

EMDB-55721:
Cryo-EM structure of nTr20 tRNA
Method: single particle / : Mehta R, Glatt S

EMDB-52583:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

EMDB-52584:
Cryo-EM structure of retron Eco2 (Ec67) in presence of Mg ions
Method: single particle / : Skorupskaite A, Jasnauskaite M, Malinauskaite L, Pausch P

PDB-9i2f:
Cryo-EM structure of retron Eco2 (Ec67)
Method: single particle / : Jasnauskaite M, Miksys A, Skorupskaite A, Malinauskaite L, Pausch P

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