[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: liang & lf)

EMDB-42123:
M. musculus SC-XL map
Method: single particle / : Letts JA, Padavannil A

EMDB-42125:
CIII focus refined map
Method: single particle / : Letts JA, Padavannil A

EMDB-42126:
CI protomer-1 membrane arm focus refined map
Method: single particle / : Letts JA, Padavannil A

EMDB-42127:
CI protomer-2 membrane arm focus refined map
Method: single particle / : Letts JA, Padavannil A

EMDB-42137:
CI protomer-2 peripheral arm focus refined map
Method: single particle / : Letts JA, Padavannil A

EMDB-42138:
CI protomer-1 peripheral arm focus refined map
Method: single particle / : Letts JA, Padavannil A

EMDB-42122:
Formation of I2+III2 supercomplex rescues respiratory chain defects
Method: single particle / : Letts JA, Padavannil A

PDB-8uca:
Formation of I2+III2 supercomplex rescues respiratory chain defects
Method: single particle / : Letts JA, Padavannil A

EMDB-39188:
Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Method: single particle / : Li QM, Su JG, Zhang J, Liang Y, Shao S, Li XY, Zhao ZX

EMDB-40554:
Cryo-EM Consensus map of the E. coli transcription-translation complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-40178:
Cryo-EM composited map of the E. coli transcription-translation complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29212:
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29213:
Cryo-EM structure of E. coli RNA polymerase Elongation complex in the Transcription-Translation Complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-29214:
Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fix:
Cryo-EM structure of E. coli RNA polymerase backtracked elongation complex harboring a terminal mismatch
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fiy:
Cryo-EM structure of E. coli RNA polymerase Elongation complex in the Transcription-Translation Complex (RNAP in an anti-swiveled conformation)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

PDB-8fiz:
Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
Method: single particle / : Florez Ariza A, Wee L, Tong A, Canari C, Grob P, Nogales E, Bustamante C

EMDB-33196:
Structure of human inner kinetochore CCAN-DNA complex
Method: single particle / : Sun LF, Tian T, Wang CL, Yang ZS, Zang JY

EMDB-33197:
Structure of human inner kinetochore CCAN complex
Method: single particle / : Tian T, Wang CL, Yang ZS, Sun LF, Zang JY

EMDB-27203:
IMM20190 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27192:
IMM20253 Fab complex with Trimer Spike protein of SARS-CoV-2 virus
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27193:
IMM20253 Fab complex with Spike monomer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27204:
IMM20184 Fab complex with SARS-CoV-2 Spike Trimer
Method: single particle / : Nikitin PA, DiMuzio JD, Dowling JP, Patel NB, Bingaman-Steele JL, Heimbach BC, Henriquez N, Nicolescu C, Polley A, Sikorski EL, Howanski RJ, Nath M, Shukla H, Scheaffer SM, Finn JP, Liang LF, Smith T, Storm N, McKay LGA, Johnson RI, Malsick LE, Honko AN, Griffiths A, Diamond MS, Sarma P, Geising DH, Morin MJ, Robinson MK

EMDB-27081:
IMM20184 and IMM20253 Fabs in ternary complex with SARS-CoV-2 receptor binding domain
Method: single particle / : Robinson MK, Nikitin PN

EMDB-23909:
Structural basis for CSPG4 as a receptor for TcdB and a therapeutic target in Clostridioides difficile infection
Method: single particle / : Chen P, Jin R

PDB-7ml7:
Structural basis for CSPG4 as a receptor for TcdB and a therapeutic target in Clostridioides difficile infection
Method: single particle / : Chen P, Jin R

EMDB-22907:
SARS-CoV-2 Spike bound to Nb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22908:
SARS-CoV-2 Spike bound to Nb6 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22909:
SARS-CoV-2 Spike bound to Nb11 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22910:
SARS-CoV-2 Spike bound to mNb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF

EMDB-22911:
SARS-CoV-2 Spike bound to Nb11 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkk:
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkl:
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-0775:
Cryo-EM structure of the human concentrative nucleoside transporter CNT3
Method: single particle / : Zhou YX, Liao LH

EMDB-8978:
Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor
Method: single particle / : Liang YL, Khoshouei M

PDB-6e3y:
Cryo-EM structure of the active, Gs-protein complexed, human CGRP receptor
Method: single particle / : Liang YL, Khoshouei M, Deganutti G, Glukhova A, Koole C, Peat TS, Radjainia M, Plitzko JM, Baumeister W, Miller LJ, Hay DL, Christopoulos A, Reynolds CA, Wootten D, Sexton PM

EMDB-7835:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist
Method: single particle / : Draper-Joyce CJ, Khoshouei M

PDB-6d9h:
Cryo-EM structure of the human adenosine A1 receptor-Gi2-protein complex bound to its endogenous agonist
Method: single particle / : Draper-Joyce CJ, Khoshouei M, Thal DM, Liang YL, Nguyen ATN, Furness SGB, Venugopal H, Baltos J, Plitzko JM, Danev R, Baumeister W, May LT, Wootten D, Sexton P, Glukhova A, Christopoulos A

EMDB-7039:
3.3 angstrom phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex.
Method: single particle / : Liang YL, Khoshouei M

PDB-6b3j:
3.3 angstrom phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex
Method: single particle / : Liang YL, Khoshouei M, Glukhova A, Furness SGB, Koole C, Zhao P, Clydesdale L, Thal DM, Radjainia M, Danev R, Baumeister W, Wang MW, Miller LJ, Christopoulos A, Sexton PM, Wootten D

EMDB-8623:
Volta phase plate cryo-electron microscopy structure of a calcitonin receptor-heterotrimeric Gs protein complex
Method: single particle / : Liang YL, Khoshouei M

PDB-5uz7:
Volta phase plate cryo-electron microscopy structure of a calcitonin receptor-heterotrimeric Gs protein complex
Method: single particle / : Liang YL, Khoshouei M, Radjainia M, Zhang Y, Glukhova A, Tarrasch J, Thal DM, Furness SGB, Christopoulos G, Coudrat T, Danev R, Baumeister W, Miller LJ, Christopoulos A, Kobilka BK, Wootten D, Skiniotis G, Sexton PM

EMDB-8361:
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Method: single particle / : Liu Z, Gutierrez-Vargas C

PDB-5t5h:
Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit
Method: single particle / : Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford Jr JL, Tong L, Frank J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more