[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 174 items for (author: li & yx)

EMDB-61691:
the wild-type human PRMT1 filament
Method: single particle / : Li YW, Ru YX

EMDB-60676:
The Cryo-EM structure of MPXV E5 in the apo state
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60677:
The Cryo-EM structure of MPXV E5 in complex with ssDNA
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60678:
The Cryo-EM structure of MPXV E5 in complex with ssDNA focused on primase and Zn binding domain
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60679:
The Cryo-EM structure of MPXV E5 in complex with ssDNA in intermediate state 1
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60680:
The Cryo-EM structure of MPXV E5 in complex with ssDNA in intermediate state 3
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60683:
The Cryo-EM map of MPXV E5 in complex with ssDNA in intermediate state 5
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60684:
The Cryo-EM structure of MPXV E5 head-to-head double hexamer conformation
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60681:
The Cryo-EM map of MPXV E5 in complex with ssDNA in intermediate state 2
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60682:
The Cryo-EM map of MPXV E5 in complex with ssDNA in intermediate state 4
Method: single particle / : Cheng YX, Han P, Wang H

EMDB-60663:
SARS-CoV-2 E-RTC bound to pRNA-nsp9 and GDP-BeF3-
Method: single particle / : Yan LM, Huang YC, Liu YX, Rao ZH, Lou ZY

EMDB-64175:
SARS-CoV-2 E-RTC in complex with RNA-nsp9 and GMPPNP
Method: single particle / : Huang YC, Liu YX, Lou ZY, Rao ZH, Yan LM

EMDB-60594:
Cryo-EM structure of hetero-bacterioferritin SoBfr12 from Shewanella oneidensis
Method: single particle / : Gao HC, Chen JH, Li YX

EMDB-62692:
SARS-CoV-2 C-RTC with 13-TP
Method: single particle / : Huang YC, Liang L, Liu YX, Yan LM, Lou ZY, Rao ZH

EMDB-44181:
Filament of D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44182:
Filament of D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44183:
Filament of D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44184:
Filament of Tau in complex with D-TLKIVWI, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44185:
Filament of Tau in complex with D-TLKIVWS, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44186:
Filament of Tau in complex with D-TLKIVWR, a D-peptide that disaggregates Alzheimer's Paired Helical Filaments, determined by Cryo-EM
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-44187:
Alzheimer's Tau Paired Helical Filaments, determined by CryoEM, before addition of D-peptide disaggregants
Method: helical / : Hou K, Ge P, Sawaya MR, Eisenberg DS

EMDB-38862:
The cryo-EM structure of a-synuclein fibril in Tris buffer.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-38863:
The cryo-EM structure of spermine induced a-synuclein fibril in Tris buffer.
Method: helical / : Yao YX, Zhao QY, Liu C, Li D

EMDB-39291:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-39323:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF23694-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-60256:
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in Metyltetraprole-bound state
Method: single particle / : Ye Y, Li ZW, Yang GF

EMDB-60317:
Cryo-EM structure of pyraclostrobin-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Li ZW, Cui GR, Yang GF

EMDB-60320:
Cryo-EM structure of Metyltetraprole-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Cui GR, Yang GF

EMDB-60323:
Cryo-EM structure of YF23694-bound porcine bc1 complex
Method: single particle / : Wang YX, Sun JY, Cui GR, Yang GF

EMDB-39703:
Cryo-EM structure of ATP-bound human very long-chain fatty acid ABC transporter ABCD3
Method: single particle / : Li Y, Chen YX, Zhou CZ, Hou WT

EMDB-39871:
Cryo-EM structure of Phytanoyl-CoA-bound human very long-chain fatty acid ABC transporter ABCD3
Method: single particle / : Li Y, Chen YX, Zhou CZ, Hou WT

EMDB-36943:
the alpha-galactosidase 5 with Cacl2
Method: single particle / : Li YW, Ru YX

EMDB-36944:
the alpha-galactosidase 5 with inhibitor ABP2
Method: single particle / : Li YW, Ru YX

EMDB-36790:
the wild-typed alpha-galactosidase 5
Method: single particle / : Li YW, Ru YX

EMDB-39107:
SARS-CoV-2 DMV nsp3-4 pore complex (full-pore)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-39109:
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C6 symmetry)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-39111:
SARS-CoV-2 DMV nsp3-4 pore complex (extended-pore)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-39112:
SARS-CoV-2 DMV nsp3-4 pore complex (consensus-pore, C3 symmetry)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-39113:
SARS-CoV-2 DMV nsp3-4 pore complex (mini-pore)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-39159:
SARS-CoV-2 DMV nsp3-4 pore complex (full-length-pore)
Method: subtomogram averaging / : Huang YX, Zhong LJ, Zhang WX, Ni T

EMDB-37375:
Allosteric regulation of nitrate transporter NRT via the signalling protein PII
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-37644:
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with signalling protein PII
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-37645:
Cryo-EM structure of cyanobacterial nitrate/nitrite transporter NrtBCD in complex with nitrate
Method: single particle / : Li B, Zhou CZ, Chen YX, Jiang YL

EMDB-35461:
Protomer 1 and 2 of the asymmetry trimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complex
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-36182:
An asymmetry dimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complexed with BEX2
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-36183:
Cryo-EM structure of neddylated Cul2-Rbx1-EloBC-FEM1B complexed with FNIP1-FLCN
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-37795:
Cry-EM structure of cannabinoid receptor-beta-arrestin-1 complex
Method: single particle / : Wang YX, Wang T, Wu LJ, Hua T, Liu ZJ

EMDB-33990:
Cryo-EM structure of EBV gHgL-gp42 in complex with mAbs 3E8 and 5E3 (localized refinement)
Method: single particle / : Liu L, Sun H, Jiang Y, Hong J, Zheng Q, Li S, Chen Y, Xia N

EMDB-33992:
Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)
Method: single particle / : Liu L, Sun H, Jiang Y, Hong J, Zheng Q, Li S, Chen Y, Xia N

EMDB-33993:
Cryo-EM density map of EBV gHgL-gp42 in complex with four mAbs 5E3, 3E8, 6H2 and 10E4
Method: single particle / : Liu L, Sun H, Jiang Y, Liu X, Zhao D, Zheng Q, Li S, Chen Y, Xia N

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more