[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 53 items for (author: kokic & g)

EMDB-19909:
PolII-TCR-STK19 structure.
Method: single particle / : Kokic G

PDB-9er2:
PolII-TCR-STK19 structure.
Method: single particle / : Kokic G

EMDB-15827:
C(N)RL4CSA-UVSSA-E2-ubiquitin complex.
Method: single particle / : Kokic G, Cramer P

PDB-8b3g:
C(N)RL4CSA-UVSSA-E2-ubiquitin complex.
Method: single particle / : Kokic G, Cramer P

EMDB-16828:
Structure of the mammalian Pol II-SPT6 complex, Struture 4 (Global map)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16829:
Structure of the mammalian Pol II-SPT6 complex, Structure 4 (Focused map for SPT6)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16830:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for elongin, map 5)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16831:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for Pol II core, Map 6)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16832:
Structure of the mammalian Pol II-Elongin complex, lacking ELOA latch (Focused map for Pol II stalk, map 7)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16833:
Structure of the mammalian Pol II-SPT6-Elongin complex, lacking the ELOA latch (global map for composite map 2)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16834:
Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (SPT6 focused map for composite map 2)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16835:
Structure of the mammalian Pol II-SPT6 complex (composite map)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16836:
Structure of the Pol II-SPT6-Elongin complex (structure 1, global map)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16837:
Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite map 2)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16838:
Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (composite map 1 for structure 2)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16839:
Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (local resolution filtered map)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-16840:
Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1 (local resolution filtered map)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

PDB-8oeu:
Structure of the mammalian Pol II-SPT6 complex (composite structure, Structure 4)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

PDB-8oev:
Structure of the mammalian Pol II-SPT6-Elongin complex, lacking ELOA latch (composite structure, structure 3)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

PDB-8oew:
Structure of the mammalian Pol II-Elongin complex, lacking the ELOA latch (composite structure, structure 2)
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

PDB-8of0:
Structure of the mammalian Pol II-SPT6-Elongin complex, Structure 1
Method: single particle / : Chen Y, Kokic G, Dienemann C, Dybkov O, Urlaub H, Cramer P

EMDB-15829:
CRL4CSA-E2-Ub (state 2)
Method: single particle / : Kokic G, Cramer P

PDB-8b3i:
CRL4CSA-E2-Ub (state 2)
Method: single particle / : Kokic G, Cramer P

EMDB-15825:
Structure of the Pol II-TCR-ELOF1 complex.
Method: single particle / : Kokic G, Cramer P

PDB-8b3d:
Structure of the Pol II-TCR-ELOF1 complex.
Method: single particle / : Kokic G, Cramer P

EMDB-15826:
Pol II-CSB-CSA-DDB1-ELOF1
Method: single particle / : Kokic G, Cramer P

PDB-8b3f:
Pol II-CSB-CSA-DDB1-ELOF1
Method: single particle / : Kokic G, Cramer P

EMDB-13009:
Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)
Method: single particle / : Kokic G, Cramer P

EMDB-13015:
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)
Method: single particle / : Kokic G, Cramer P

PDB-7oob:
Pol II-CSB-CSA-DDB1-UVSSA-ADPBeF3 (Structure2)
Method: single particle / : Kokic G, Cramer P

PDB-7opc:
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 4)
Method: single particle / : Kokic G, Cramer P

EMDB-13004:
Pol II-CSB-CSA-DDB1-UVSSA (Structure1)
Method: single particle / : Kokic G, Cramer P

EMDB-13010:
Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3)
Method: single particle / : Kokic G, Cramer P

EMDB-13016:
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5)
Method: single particle / : Kokic G, Cramer P

PDB-7oo3:
Pol II-CSB-CSA-DDB1-UVSSA (Structure1)
Method: single particle / : Kokic G, Cramer P

PDB-7oop:
Pol II-CSB-CSA-DDB1-UVSSA-PAF-SPT6 (Structure 3)
Method: single particle / : Kokic G, Cramer P

PDB-7opd:
Pol II-CSB-CRL4CSA-UVSSA-SPT6-PAF (Structure 5)
Method: single particle / : Kokic G, Cramer P

EMDB-13116:
Dimeric form of SARS-CoV-2 RNA-dependent RNA polymerase
Method: single particle / : Jochheim FA, Tegunov D

PDB-7oyg:
Dimeric form of SARS-CoV-2 RNA-dependent RNA polymerase
Method: single particle / : Jochheim FA, Tegunov D, Hillen HS, Schmitzova J, Kokic G, Dienemann C, Cramer P

EMDB-13135:
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with A
Method: single particle / : Kabinger F, Stiller C

EMDB-13138:
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with G
Method: single particle / : Kabinger F, Stiller C

PDB-7ozu:
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with A
Method: single particle / : Kabinger F, Stiller C, Schmitzova J, Dienemann C, Kokic G, Hillen HS, Hoebartner C, Cramer P

PDB-7ozv:
SARS-CoV-2 RdRp with Molnupiravir/ NHC in the template strand base-paired with G
Method: single particle / : Kabinger F, Stiller C, Schmitzova J, Dienemann C, Kokic G, Hillen HS, Hoebartner C, Cramer P

EMDB-11993:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -3 (structure 1)
Method: single particle / : Kokic G, Hillen HS

EMDB-11994:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -4 (structure 2)
Method: single particle / : Kokic G, Hillen HS

EMDB-11995:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with AMP at position -4 (structure 3)
Method: single particle / : Kokic G, Hillen HS

PDB-7b3b:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -3 (structure 1)
Method: single particle / : Kokic G, Hillen HS, Tegunov D, Dienemann C, Seitz F, Schmitzova J, Farnung L, Siewert A, Hoebartner C, Cramer P

PDB-7b3c:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -4 (structure 2)
Method: single particle / : Kokic G, Hillen HS, Tegunov D, Dienemann C, Seitz F, Schmitzova J, Farnung L, Siewert A, Hoebartner C, Cramer P

PDB-7b3d:
Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with AMP at position -4 (structure 3)
Method: single particle / : Kokic G, Hillen HS, Tegunov D, Dienemann C, Seitz F, Schmitzova J, Farnung L, Siewert A, Hoebartner C, Cramer P

EMDB-11007:
Structure of replicating SARS-CoV-2 polymerase
Method: single particle / : Hillen HS, Kokic G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more