[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 125 items for (author: ko & tp)

EMDB-70909:
Heteromeric GluA1/A2 in the inactive state, consensus refinement of LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70910:
Heteromeric GluA1/A2 in the inactive state, transmembrane domain (TMD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70911:
Heteromeric GluA1/A2 in the inactive state, ligand binding domain (LBD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70912:
Heteromeric GluA1/A2 in the inactive state, composite map of LBD-TMD
Method: single particle / : Yen LY, Sobolevsky AI, Newton TP, Gangwar SP

EMDB-70913:
Heteromeric GluA1/A2 in the activated state, consensus refinement of ATD-LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70914:
Heteromeric GluA1/A2 in the activated state, ligand binding domain (LBD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70915:
Heteromeric GluA1/A2 in the activated state, transmembrane domain (TMD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70916:
Heteromeric GluA1/A2-CNIH1 in the activated state, consensus refinement of LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70917:
Heteromeric GluA1/A2-CNIH1 in the activated state, ligand binding domain (LBD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70918:
Heteromeric GluA1/A2-CNIH1 in the activated state, transmembrane domain (TMD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70919:
Composite map of GluA1/A2 in the activated state, in complex with positive allosteric modulator (R,R)-2b and agonist glutamate (ATD-LBD-TMD)
Method: single particle / : Yen LY, Sobolevsky AI, Newton TP, Gangwar SP

EMDB-70920:
Heteromeric GluA1/A2-CNIH1 in the activated state, composite map of LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70921:
Heteromeric GluA1/A2 in the desensitized state, consensus refinement of ATD-LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70922:
Heteromeric GluA1/A2 in the desensitized state, amino-terminal domain (ATD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70923:
Heteromeric GluA1/A2 in the desensitized state, ligand binding domain (LBD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70924:
Heteromeric GluA1/A2 in the desensitized state, transmembrane domain (TMD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70925:
Heteromeric GluA1/A2 in the desensitized state, composite map of ATD-LBD-TMD
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-75274:
Heteromeric GluA1/A2 in the activated state, amino-terminal domain (ATD)
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Sobolevsky AI

EMDB-70507:
HCoV-229E S2P bound by one DH1533 Fab, consensus map
Method: single particle / : Wrapp D

EMDB-70508:
HCoV-229E S2P bound by one DH1533 Fab, focused map
Method: single particle / : Wrapp D

EMDB-63984:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

PDB-9uaj:
Ovorubin from the golden apple snail (Pomacea canaliculata)
Method: single particle / : Wangkanont K, Saw WG, Tran BN, Wilasluck P

EMDB-70440:
HCoV-229E S2P bound by three DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70441:
HCoV-229E S2P bound by two DH1533 Fabs
Method: single particle / : Wrapp D

EMDB-70442:
HCoV-229E S2P bound by one DH1533 Fab
Method: single particle / : Wrapp D

EMDB-66121:
Structure of E.coli ribosome in complex with an engineered arrest peptide
Method: single particle / : Sriramoju MK, Ko TP, Draczkowski P, Hsu STD

EMDB-66122:
Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
Method: single particle / : Sriramoju MK, Ko TP, Draczkowski P, Hsu STD

EMDB-64256:
JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)
Method: single particle / : Kohga H, Lertpreedakorn N, Tsukazaki T

PDB-9ukv:
JM Complex - E. coli MurJ, Levivirus M lysis protein LysM (SglM)
Method: single particle / : Kohga H, Lertpreedakorn N, Tsukazaki T

EMDB-60061:
Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor
Method: single particle / : Sriramoju MK, Ko TP, Draczkowski P, Hsu STD

EMDB-60034:
Structure of E.coli ribosome in complex with an engineered arrest peptide
Method: single particle / : Sriramoju MK, Ko TP, Draczkowski P, Hsu STD

EMDB-53511:
SpCas9 with computationally designed SpCas9_b10 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-48283:
61-12A01 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48286:
206-3G08 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48287:
206-9C09 Fab in complex with HIV-1 GT1.1 v4.1 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48290:
273-4D01 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-48291:
253-7A03 Fab in complex with HIV-1 BG505 SOSIP Env trimer and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-70490:
BG505 GT1.1 SOSIP in complex with gp41-base epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70491:
BG505 GT1.1 SOSIP in complex with V1V2V3 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70492:
BG505 GT1.1 SOSIP in complex with C3V5 epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70493:
BG505 GT1.1 SOSIP in complex with CD4bs epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70494:
BG505 GT1.1 SOSIP in complex with gp41 glycan hole epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-70495:
BG505 GT1.1 SOSIP in complex with gp41 fusion peptide epitope polyclonal antibodies isolated from a participant in the IAVI C101 clinical trial
Method: single particle / : Ozorowski G, Ward AB

EMDB-53510:
SpCas9 with computationally designed SpCas9_b3 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-47295:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Philanthotoxin-74
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47296:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Nephilatoxin-8
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47297:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Spermine
Method: single particle / : Gangwar SP, Yen LY, Newton TP, Yelshanskaya MV, Sobolevsky AI

EMDB-47298:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in complex with positive allosteric modulator BPAM-344 and channel blocker Kukoamine-A
Method: single particle / : Yen LY, Newton TP, Gangwar SP, Yelshanskaya MV, Sobolevsky AI

EMDB-45863:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 3 closed RBDs
Method: single particle / : Ke Z, Croll TI, Briggs JAG

EMDB-45864:
Cryo-EM structure of SARS-CoV-2 Spike Proteins on intact virions: B.1 variant 1 open RBD
Method: single particle / : Ke Z, Croll TI, Briggs JAG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more