[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 249 items for (author: klein & de)

EMDB-48818:
Low resolution cryo-EM reconstruction of the DY2 collagen mimetic fibrils
Method: single particle / : Kreutzberger MAB, Cole CC, Egelman EH, Hartgerink JD

EMDB-70018:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70019:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70020:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70021:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-70022:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2q:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 0 (unbound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2r:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 1 (1 Fab bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2s:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 2 (2 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2t:
BG505-DS SOSIP in complex with 007 bNAb Fabs - Class 3 (3 Fabs bound)
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9o2u:
BG505 SOSIP in complex with 007 bNAb IgG1 - trimer-dimer class
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-51901:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

PDB-9h6u:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-42363:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42364:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42365:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42366:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulr:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8uls:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ult:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulu:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-45443:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Jaiswal D

EMDB-45444:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Civljak A

PDB-9cci:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Jaiswal D

PDB-9ccj:
Dissecting human monoclonal antibody responses from mRNA and protein-based booster vaccinations against XBB1.5 SARS-CoV-2
Method: single particle / : Bajic G, Civljak A

EMDB-52724:
cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Method: single particle / : Zhu Y, Shen J, Shen Y, Xu J, Zhang P

PDB-9i8i:
cryoEM structure of HIV-1 KAKA/G225R mature CA hexamer
Method: single particle / : Zhu Y, Shen J, Shen Y, Xu J, Zhang P

EMDB-51821:
The structure from subtomogram averaging of HIV immature Gag with G225R mutation
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51822:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51823:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51824:
The structure from subtomogram averaging of HIV-1 immature Gag with A77V/KAKA/T8I/G225R mutations
Method: subtomogram averaging / : Zhu Y, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51825:
The structure from subtomogram averaging of HIV-1 immature Gag with KAKA/T8I mutations
Method: subtomogram averaging / : Zhu Y, Lucic A, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-51826:
The structure from subtomogram averaging of HIV-1 Gag with K227A mutation
Method: subtomogram averaging / : Zhu Y, Chen L, Kleinpeter AB, Shen J, Freed OE, Zhang P

EMDB-44556:
Structure of the extracellular domain of Protein Sevenless
Method: single particle / : Zhang J, Klein DE

EMDB-43512:
CryoEM structure of human GABAA receptor pi (GABRP) apo state
Method: single particle / : Wang Y, Klein D

EMDB-43546:
CryoEM structure of human GABAA receptor pi (GABRP) in complex with GABA
Method: single particle / : Wang Y, Klein D

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18752:
EcZorAB_WT ZorB PGBDs Local refinement
Method: single particle / : Haidai H, Nicholas MIT

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qy7:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

PDB-8qyc:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

PDB-8qyd:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more