[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 348 items for (author: ker & ds)

EMDB-73869:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 25
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73870:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody G12
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73871:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 15
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73872:
Cryo-EM structure of Enterotoxigenic Escherichia coli autotransporter A (EatA) complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73873:
Cryo-EM structure of Secreted extracellular protein A (SepA) from Shigella flexneri complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-73874:
Cryo-EM structure of Protein involved in colonization (Pic) from Enteroaggregative Escherichia coli complexed with the fragment antigen binding domain of monoclonal antibody 40
Method: single particle / : Buckley DP, Berndsen ZT

EMDB-71831:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

PDB-9pt5:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-52847:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

PDB-9ifo:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

EMDB-47765:
Week 26 C3V5, gp41-GH and gp41-base epitope polyclonal antibodies from participant 202 in complex with ConM SOSIP
Method: single particle / : Lin RN, Torres JL, Tran AS, Ozorowski G, Ward AB

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mni:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-55190:
Human Methionine Synthase With Methyltetrahydrofolate, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55191:
Human Methionine Synthase With Methyltetrahydrofolate, C-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55192:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55193:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-ON From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55194:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-OFF From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55195:
Human Methionine Synthase With Methylcobalamin, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55196:
Human Methionine Synthase With Methylcobalamin, Activation Domain From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-47031:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

EMDB-47041:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

EMDB-47043:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

EMDB-49290:
The rigid portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49291:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex prepared with forked DNA, ATP-gamma-S and Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49306:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with Pritelivir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-49326:
The flexible portion of Cryo-EM structure of Herpesvirus Helicase-Primase complex with amenamevir
Method: single particle / : Yao Q, Yu X, Baker D, Jensen G

EMDB-48093:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Method: single particle / : Borst AJ

EMDB-48101:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 3 Fabs
Method: single particle / : Borst AJ

EMDB-48102:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C4 Reconstruction]
Method: single particle / : Borst AJ

EMDB-70264:
NCS.1.1 Fab in complex with the sNAp of A/California/04/2009 (CA09, H1N1) -- 4 Fabs [C1 Reconstruction]
Method: single particle / : Borst AJ

EMDB-49573:
Cryo-EM structure of a de-novo designed binder NY1-B04 in complex with HLA-A*02:01 and NY-ESO-1-derived peptide SLLMWITQC
Method: single particle / : Gharpure A, Fernandez-Quintero ML, Ward AB

EMDB-46902:
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin precursor 5.3
Method: single particle / : Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG

EMDB-47968:
Cryo-EM structure of alpha5beta1 integrin in complex with NeoNectin candidate 2, open conformation
Method: single particle / : Werther R, Nguyen A, Estrada Alamo KA, Wang X, Campbell MG

EMDB-47975:
Cryo-EM structure of the portal-tail complex of LME-1 phage
Method: single particle / : Deme JC, Lea SM

EMDB-47984:
Cryo-EM structure of the icosahedral capsid of LME-1 phage
Method: single particle / : Deme JC, Lea SM

EMDB-50741:
Structure of the human two pore domain potassium ion channel THIK-1 (K2P13.1) in a closed conformation
Method: single particle / : Rodstrom KEJ, Tucker SJ

PDB-9ft7:
Structure of the human two pore domain potassium ion channel THIK-1 (K2P13.1) in a closed conformation
Method: single particle / : Rodstrom KEJ, Tucker SJ

EMDB-50258:
CryoEM structure of recombinant Trypanosoma cruzi apo proteasome 20S subunit
Method: single particle / : Rowland P

EMDB-50260:
CryoEM structure of native Trypanosoma cruzi apo proteasome 20S subunit
Method: single particle / : Rowland P

PDB-9f9p:
CryoEM structure of recombinant Trypanosoma cruzi apo proteasome 20S subunit
Method: single particle / : Rowland P

PDB-9f9t:
CryoEM structure of native Trypanosoma cruzi apo proteasome 20S subunit
Method: single particle / : Rowland P

EMDB-51158:
Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1)
Method: single particle / : Hall PH, Rodstrom KEJ, Tucker SJ

EMDB-51159:
Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1) G236R mutant
Method: single particle / : Rodstrom KEJ, Hall PH, Tucker SJ

EMDB-51160:
Structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1)
Method: single particle / : Rodstrom KEJ, Hall PH, Tucker SJ

PDB-9g9v:
Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1)
Method: single particle / : Hall PH, Rodstrom KEJ, Tucker SJ

PDB-9g9w:
Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1) G236R mutant
Method: single particle / : Rodstrom KEJ, Hall PH, Tucker SJ

PDB-9g9x:
Structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1)
Method: single particle / : Rodstrom KEJ, Hall PH, Tucker SJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more