[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 98 items for (author: kanai & r)

EMDB-65385:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

PDB-9vvo:
cryo-EM structure of gastric proton pump bound to YK01
Method: single particle / : Saito H, Abe K

EMDB-74650:
Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
Method: single particle / : Kanai T, Gorman J

PDB-9zru:
Cryo-EM structure of Croatia 2023 H3N2 Influenza A hemagglutinin (HA) trimer
Method: single particle / : Kanai T, Gorman J

EMDB-65098:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65099:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the transient state of dephosphorylation (E2~P)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65100:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ATP form)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

EMDB-65101:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ADP form)
Method: single particle / : Kanai R, Cornelius F, Vilsen B, Toyoshima C

PDB-9viy:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the E2P state
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9viz:
Cryo-EM structure of palytoxin-bound Na+,K+-ATPase in the transient state of dephosphorylation (E2~P)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9vj0:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ATP form)
Method: single particle / : Kanai R, Vilsen B, Cornelius F, Toyoshima C

PDB-9vj1:
Cryo-EM structure of Na+,K+-ATPase that forms a cation channel with palytoxin (ADP form)
Method: single particle / : Kanai R, Cornelius F, Vilsen B, Toyoshima C

EMDB-52121:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52122:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52123:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer in the presence of dCTP in solution (not bound)
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52124:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with dCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52125:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer in the presence of 5mdCTP in solution (not bound)
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-52126:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with 5mdCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfq:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): trimer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfr:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer without a ligand
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hfs:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with dCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

PDB-9hft:
Cryo-EM structure of human CDADC1 inactive mutant (E400A): hexamer with 5mdCTP bound in the active site
Method: single particle / : Slyvka A, Rathore I, Yang R, Kanai T, Lountos G, Wang Z, Skowronek K, Czarnocki-Cieciura M, Wlodawer A, Bochtler M

EMDB-37132:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

EMDB-37134:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

EMDB-37135:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

EMDB-37136:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

EMDB-37137:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

EMDB-37138:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-37140:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

EMDB-37141:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

EMDB-37142:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdd:
Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map
Method: single particle / : Lee Y

PDB-8kdf:
Structure of LAT1-CD98hc in complex with JPH203, focused on TMD
Method: single particle / : Lee Y

PDB-8kdg:
Structure of LAT1-CD98hc-Fab170 in complex with BCH, consensus map
Method: single particle / : Lee Y

PDB-8kdh:
Structure of LAT1-CD98hc in complex with BCH, focused on TMD
Method: single particle / : Lee Y

PDB-8kdi:
Structure of apo inward-open LAT1-CD98hc-Fab170 in nanodisc, consensus map
Method: single particle / : Lee Y

PDB-8kdj:
Structure of apo inward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

PDB-8kdn:
Structure of LAT1-CD98hc in complex with L-Phe, focused on TMD
Method: single particle / : Lee Y

PDB-8kdo:
Structure of LAT1-CD98hc in complex with melphalan, focused on TMD
Method: single particle / : Lee Y

PDB-8kdp:
Structure of apo outward-open LAT1-CD98h in nanodisc, focused on TMD
Method: single particle / : Lee Y

EMDB-46478:
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Kanai T, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-46532:
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Hodges S, Morano NC, Shapiro L, Kwong PD, Gorman J

PDB-9d1w:
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Kanai T, Morano NC, Shapiro L, Kwong PD, Gorman J

PDB-9d3d:
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Hodges S, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-38291:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

PDB-8xej:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

EMDB-35500:
Cryo-EM structure of the gastric proton pump with bound DQ-02
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-35501:
Cryo-EM structure of the gastric proton pump with bound DQ-06
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-35502:
Cryo-EM structure of the gastric proton pump with bound DQ-18
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

EMDB-36424:
Cryo-EM structure of the gastric proton pump with bound DQ-21
Method: single particle / : Abe K, Yokoshima S, Yoshimori A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more