[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 114 items for (author: jomaa & a)

EMDB-76891:
70S ribosome containing RpmE2 from Neisseria gonorrhoeae
Method: single particle / : Malezyna K, Forehand AL, Criss AK, Jomaa A

EMDB-76892:
70S ribosome containing RpmE from Neisseria gonorrhoeae
Method: single particle / : Malezyna K, Forehand AL, Criss AK, Jomaa A

EMDB-71645:
In vitro reconstituted complex of purified S. pombe large ribosomal subunit and SNOR
Method: single particle / : Gluc M, Jomaa A

PDB-9phc:
In vitro reconstituted complex of purified S. pombe large ribosomal subunit and SNOR
Method: single particle / : Gluc M, Jomaa A

EMDB-54290:
in situ S. pombe hibernating ribosome after 7 days of glucose depletion
Method: subtomogram averaging / : Rosa H, Gluc M, Jomaa A, Mattei S

EMDB-54353:
In situ Outer Mitochondrial Membrane Tethered Hibernating Ribosomes from S. pombe under glucose depletion
Method: subtomogram averaging / : Rosa H, Gluc M, Jomaa A, Mattei S

EMDB-54354:
In situ Free Cytosolic Hibernating Ribosomes from S. pombe under glucose depletion
Method: subtomogram averaging / : Rosa H, Gluc M, Jomaa A, Mattei S

PDB-9rvu:
in situ S. pombe hibernating ribosome after 7 days of glucose depletion
Method: subtomogram averaging / : Rosa H, Gluc M, Jomaa A, Mattei S

EMDB-72314:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

PDB-9q7q:
ABCE1-eRF1-RNC-AMD1C
Method: single particle / : Maldosevic E, Jomaa A

EMDB-71286:
NAC H59-undocked barrel: Ribosome nascent chain complex (Oxa1LdelMTS)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-71287:
NAC H59-docked barrel: Ribosome nascent chain complex (Oxa1LdelMTS)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-49659:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-49901:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nqj:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9nxc:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-49275:
Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
Method: single particle / : Zdancewicz S, Jomaa A

PDB-9ndp:
Structure of stalled ribosome and nascent chain in complex with NMT2 and NAC
Method: single particle / : Zdancewicz S, Jomaa A

EMDB-48552:
NAC: Ribosome nascent chain complex(Oxa1L)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-71310:
NAC: ribosome nascent chain complex (Hsp60)
Method: single particle / : Maldosevic E, Jomaa A

PDB-9mr4:
NAC: Ribosome nascent chain complex(Oxa1L)
Method: single particle / : Maldosevic E, Jomaa A

EMDB-70448:
Cryo-EM structure of OS9-SEL1L-HRD1 dimer
Method: single particle / : Lin L, Maldosevic E, Jomaa A, Qi L

EMDB-70452:
Locally refined OS9-SEL1L cryo-EM map
Method: single particle / : Lin L, Maldosevic E, Jomaa A, Qi L

PDB-9og0:
Cryo-EM structure of OS9-SEL1L-HRD1 dimer
Method: single particle / : Lin L, Maldosevic E, Jomaa A, Qi L

EMDB-44435:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

PDB-9bcr:
Cryo-EM structure of a bacterial prototype ATP-binding cassette transporter MalFGK2.
Method: single particle / : Qian R, Jing W, Vinay I, Shanwen Z, Jeehae S, William GL, Luis MRH, Jong HS, Young AG, IIya L, Kirill M, Baron C, Huan B

EMDB-51002:
Untethered Cytoplasmic Fission Yeast Ribosome
Method: subtomogram averaging / : Rosa H, Gemin O, Gluc M, Mattei S, Jomaa A

EMDB-43970:
Non-translating Schizosaccharomyces pombe ribosome large subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43971:
Non-translating Schizosaccharomyces pombe ribosome small subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43972:
Non-translating S. pombe ribosome
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43973:
Non-translating S. pombe ribosome large subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43974:
Translating Schizosaccharomyces pombe ribosome small subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43975:
Translating Schizosaccharomyces pombe ribosome large subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-43976:
Translating S. pombe ribosome
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-50266:
Cytoplasmic Fission Yeast Ribosome Tethered to the Outer Mitochondrial Membrane
Method: subtomogram averaging / : Gemin O, Gluc M, Rosa H, Mattei S, Jomaa A

EMDB-51030:
Untethered Cytoplasmic Fission Yeast Ribosome (S. pombe)
Method: subtomogram averaging / : Rosa H, Gemin O, Gluc M, Mattei S, Jomaa A

PDB-9axt:
Non-translating S. pombe ribosome
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

PDB-9axu:
Non-translating S. pombe ribosome large subunit
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

PDB-9axv:
Translating S. pombe ribosome
Method: single particle / : Gluc M, Gemin O, Purdy M, Mattei S, Jomaa A

EMDB-17367:
Ternary complex of translating ribosome, NAC and METAP1
Method: single particle / : Jia M, Jaskolowski M, Scaiola A, Jomaa A, Ban N

PDB-8p2k:
Ternary complex of translating ribosome, NAC and METAP1
Method: single particle / : Jia M, Jaskolowski M, Scaiola A, Jomaa A, Ban N

EMDB-16232:
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Method: single particle / : Jaskolowski M, Jomaa A, Gamerdinger M, Shrestha S, Leibundgut M, Deuerling E, Ban N

PDB-8btk:
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Method: single particle / : Jaskolowski M, Jomaa A, Gamerdinger M, Shrestha S, Leibundgut M, Deuerling E, Ban N

EMDB-15793:
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

PDB-8b0x:
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

EMDB-15794:
Translating 70S ribosome in the rotated state (A/A and P/E tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

EMDB-15795:
Translating 70S ribosome in the rotated state (A/P and P/E tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

EMDB-15796:
Translating 70S ribosome in the unrotated state (A and P tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

EMDB-15797:
Translating 70S ribosome in the unrotated state (A,P and E tRNAs)
Method: single particle / : Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S

EMDB-14191:
Ternary complex of ribosome nascent chain with SRP and NAC
Method: single particle / : Jomaa A, Gamerdinger M, Hsieh H, Wallisch A, Chandrasekaran V, Ulusoy Z, Scaiola A, Hegde R, Shan S, Ban N, Deuerling E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more