[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 370 items for (author: jin & ms)

EMDB-61099:
Cryo-EM structure of the human glucose transporter, GLUT7 in outward-facing open conformation
Method: single particle / : Lee SS, Kim S, Jin MS

EMDB-42636:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

PDB-8uw1:
Cryo-EM structure of DNMT3A1 UDR in complex with H2AK119Ub-nucleosome
Method: single particle / : Gretarsson K, Abini-Agbomson S, Armache KJ, Lu C

EMDB-60647:
Cryo-EM structure of the human P2X3 receptor-compound 26a complex
Method: single particle / : Kim S, Kim GR, Kim YO, Han X, Nagel J, Kim J, Song DI, Muller CE, Yoon MH, Jin MS, Kim YC

EMDB-50091:
Vibrio cholerae DdmD-DdmE holo complex
Method: single particle / : Loeff L, Jinek M

PDB-9ezy:
Vibrio cholerae DdmD-DdmE holo complex
Method: single particle / : Loeff L, Jinek M

EMDB-39753:
Activation mechanism and novel binding site of the BKCa channel activator CTIBD
Method: single particle / : Lee N, Kim S, Jo H, Lee NY, Jin MS, Park CS

EMDB-50090:
Vibrio cholerae DdmD apo complex
Method: single particle / : Loeff L, Jinek M

PDB-9ezx:
Vibrio cholerae DdmD apo complex
Method: single particle / : Loeff L, Jinek M

EMDB-39534:
Cryo-EM structure of the human ABCB6 in complex with Cd(II):GSH
Method: single particle / : Choi SH, Lee SS, Lee HY, Kim S, Kim JW, Jin MS

EMDB-39535:
Cryo-EM structure of the human ABCB6 in complex with Cd(II):Phytochelatin 2
Method: single particle / : Choi SH, Lee SS, Lee HY, Kim S, Kim JW, Jin MS

EMDB-38453:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-38454:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xlm:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8xln:
Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37648:
SARS-CoV-2 EG.5.1 spike glycoprotein (1-up state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37650:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-37651:
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmd:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

PDB-8wmf:
Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Method: single particle / : Nomai T, Anraku Y, Kita S, Hashiguchi T, Maenaka K

EMDB-19477:
Saccharomyces cerevisiae FAS type I
Method: single particle / : Mann D, Grininger M, Ludig D, Sachse C

EMDB-19489:
Tobacco mosaic virus from scanning transmission electron microscopy at CSA=2.0 mrad
Method: helical / : Mann D, Filopoulou A, Sachse C

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

EMDB-17957:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pv8:
Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17969:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17970:
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pvk:
Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

PDB-8pvl:
Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17879:
Chaetomium thermophilum Rix1-complex
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17880:
Chaetomium thermophilum low-resolution Rixosome
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17881:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - 5S RNP/Rsa4-E117D
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17882:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - Foot
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17883:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - H68/H69
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17884:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - Mrt4/uL11
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17885:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - local refinement - UTP30-ITS2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17886:
Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17887:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - 5S RNP/Rsa4-E117D
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17888:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - Foot
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17889:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - uL1 stalk
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17890:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - Sda1-Ipi1
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17891:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - local refinement - (Rix1)2-(Ipi3)2
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17892:
Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - consensus refinement
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

EMDB-17893:
Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - local refinement - CP
Method: single particle / : Thoms M, Cheng J, Denk T, Berninghausen O, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more