[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 476 items for (author: jin & ms)

EMDB-49942:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

PDB-9nyr:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 24
Method: single particle / : Collier P, Zheng X, Ford M, Weiss M, Aversa R, Chen D, Li K, Growney JD, Yang A, Sathappa M, Breitkopf SB, Enerson B, Sawant R, Su L, Howarth L, Liang T, Paul A, Sharma K, Williams J, Kwiatkowski NP

EMDB-64523:
Structure of MHV68 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Xie C, Sun C, Zeng MS, Liu Z, Fang XY

EMDB-64532:
Structure of MHV68 glycoprotein B
Method: single particle / : Cheng BZ, Fang XY, Xie C, Sun C, Liu Z, Zeng MS

EMDB-64607:
Macacine gammaherpesvirus 4 glycoprotein B in complex with Fab5
Method: single particle / : Cheng BZ, Liu Z

EMDB-49740:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2B3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49741:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V2C3
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-49742:
Venezuelan Equine Encephalitis Virus in complex with the single domain antibody V3A8f
Method: single particle / : Pletnev S, Kwong PD, Zhou T, Kwong P

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-65215:
Bacillus Subtilis Ku core homodimer complexed with double strand DNA
Method: single particle / : Kim WJ, Kim MS

EMDB-39670:
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Method: single particle / : Fang XY, Sun C, Zeng MS, Liu Z

EMDB-71704:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

PDB-9pkv:
HU-38 Fab with PRAME pMHC
Method: single particle / : Mortenson DE, Yu X

EMDB-63603:
Cryo-EM structure of Rc-o319 RBD/R. cornutus ACE2 complex
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-65045:
Cryo-EM Structure of Rc-o319 Ectodomain trimer
Method: single particle / : Matsumoto K, Shihoya W, Nureki O

EMDB-61190:
Structure of AAV8 in complex with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61205:
Structure of AAV8 in the complex of AAV8 with its receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61206:
Structure of AAV8 capsid in complex with receptor
Method: single particle / : Xu H, Wang GP, Su XD

EMDB-61285:
Cryo-EM structure of Outward state Anhydromuropeptide permease (AmpG) complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Cho H

EMDB-47000:
Rhesus RHA10.01 Fab in complex with HIV-1 Env BG505 DS-SOSIP trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-60093:
Cryo-EM structure of inward state Anhydromuropeptide permease (AmpG)
Method: single particle / : Cho HS, Kim U, Chang N, Kim H, Yoo Y

EMDB-60190:
Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
Method: single particle / : Chang N, Kim U, Yoo Y, Kim H, Cho H

EMDB-51378:
Structure of the human mitochondrial pyruvate carrier inhibited by a UK5099-derivative
Method: single particle / : Sichrovsky M, Lacabanne D, Ruprecht JJ, Rana JJ, Stanik K, Dionysopoulou M, Sowton AP, King MS, Jones S, Cooper L, Hardwick SW, Paris G, Chirgadze DY, Ding S, Fearnley IMF, Palmer S, Pardon E, Steyaert J, Leone V, Forrest LR, Tavoulari S, Kunji ERS

EMDB-51379:
Structure of the human mitochondrial pyruvate carrier inhibited by zaprinast
Method: single particle / : Sichrovsky M, Lacabanne D, Ruprecht JJ, Rana JJ, Stanik K, Dionysopoulou M, Sowton AP, King MS, Jones S, Cooper L, Hardwick SW, Paris G, Chirgadze DY, Ding S, Fearnley IM, Palmer S, Pardon E, Steyaert J, Leone V, Forrest LR, Tavoulari S, Kunji ERS

EMDB-51381:
Structure of the human mitochondrial pyruvate carrier inhibited by mitoglitazone
Method: single particle / : Sichrovsky M, Lacabanne D, Ruprecht JJ, Rana JJ, Stanik K, Dionysopoulou M, King MS, Sowton AP, Jones S, Cooper L, Hardwick SW, Paris G, Chirgadze DY, Ding S, Fearnley IM, Palmer S, Pardon E, Steyaert J, Leone V, Forrest LR, Tavoulari S, Kunji ERS

EMDB-39900:
Cryo-EM structure of outward state Anhydromuropeptide permease (AmpG) G50W/L269W
Method: single particle / : Yoo Y, Chang N, Kim U, Kim H, Cho H

EMDB-53196:
Human pre-60S - State 3
Method: single particle / : Thoms M, Denk T, Beckmann R

PDB-9qiw:
Human pre-60S - State 3
Method: single particle / : Thoms M, Denk T, Beckmann R

EMDB-46464:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-46465:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0w:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

PDB-9d0x:
Cryo-EM structure of CDK2/CyclinE1 in complex with CRBN/DDB1 and Cpd 4 (local mask)
Method: single particle / : Kwiatkowski N, Liang T, Sha Z, Collier PN, Yang A, Sathappa M, Paul A, Su L, Zheng X, Aversa R, Li K, Mehovic R, Breitkopf SB, Chen D, Howarth CL, Yuan K, Jo H, Growney JD, Weiss M, Williams J

EMDB-63355:
Cryo-EM structure of the wild-type diabody complex (CitS-diabody #1-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63356:
Cryo-EM structure of the S82C-S82C diabody complex (CitS-diabody #2-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63357:
Cryo-EM structure of the G15C-R66C and T83C-T83C diabody complex (CitS-diabody #7-TLR3)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-63358:
Cryo-EM structure of the Klebsiella pneumoniae CitS (citrate-bound occluded state)
Method: single particle / : Kim S, Kim JW, Park JG, Lee SS, Choi SH, Lee JO, Jin MS

EMDB-44666:
Cryo-EM of RBD(EG5.1)/1301B7 Fab Complex
Method: single particle / : Walter MR, Green TJ

EMDB-61642:
Cryo-EM structure of human BKca channel-compound 10b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

EMDB-61643:
Cryo-EM structure of human BKca channel-compound 51b complex
Method: single particle / : Kim S, Park S, Lee NY, Lee EY, Lee N, Roh EC, Kim YG, Kim HJ, Jin MS, Park CS, Kim YC

EMDB-39300:
hTLR3/minibinder 7.7
Method: single particle / : Kim H

EMDB-39301:
hTLR3/minibinder 8.6
Method: single particle / : Kim H

PDB-8yht:
hTLR3/minibinder 7.7
Method: single particle / : Kim H, Kim H

PDB-8yhu:
hTLR3/minibinder 8.6
Method: single particle / : Kim H, Kim H

EMDB-60210:
Cryo-EM structure of the Drosophila INDY (apo-asymmetric, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60213:
Cryo-EM structure of the Drosophila INDY (apo-asymmetric, pH8)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60215:
Cryo-EM structure of the Drosophila INDY (apo outward-open, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60216:
Cryo-EM structure of the Drosophila INDY (DIDS-bound asymmetric, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

EMDB-60217:
Cryo-EM structure of the Drosophila INDY (DIDS-bound outward-open, pH 6)
Method: single particle / : Kim S, Park JG, Choi SH, Kim JW, Jin MS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more