[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,609 items for (author: im & w)

EMDB-16543:
Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16544:
Structure of human mitochondrial RNase Z in complex with mitochondrial pre-tRNA-His(0,Ser)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, YU W, LUISI B, TISNE C

EMDB-16545:
Structure of human mitochondrial CCA-adding enzyme in complex with mitochondrial pre-tRNA-Ile
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16547:
Structure of human mitochondrial MRPP1-MRPP2 in complex with mitochondrial pre-tRNA-Ile
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16667:
Consensus Refinement - Map 1
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16668:
Local refinement - Map 2
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16669:
Cryo-EM structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16673:
Consensus Refinement - Map 1
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, YU W, LUISI B, TISNE C

EMDB-16674:
Local refinement - Map 2 (mask 1)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, YU W, LUISI B, TISNE C

EMDB-16675:
Local refinement - map 3 (Mask 2)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, YU W, LUISI B, TISNE C

EMDB-16690:
Consensus Refinement - Map 1
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16691:
Local refinement - Map 2 (Mask 1)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-16692:
Global Refinement - Map 1
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

PDB-8cbk:
Structure of human mitochondrial RNase P in complex with mitochondrial pre-tRNA-His(5,Ser)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

PDB-8cbl:
Structure of human mitochondrial RNase Z in complex with mitochondrial pre-tRNA-His(0,Ser)
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, YU W, LUISI B, TISNE C

PDB-8cbm:
Structure of human mitochondrial CCA-adding enzyme in complex with mitochondrial pre-tRNA-Ile
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

PDB-8cbo:
Structure of human mitochondrial MRPP1-MRPP2 in complex with mitochondrial pre-tRNA-Ile
Method: single particle / : MEYNIER V, HARDWICK S, CATALA M, ROSKE J, OERUM S, CHIRGADZE D, BARRAUD P, LUISI B, TISNE C

EMDB-17197:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19108:
Human TPC2 in Complex withAntagonist (R)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

PDB-8ouo:
Human TPC2 in Complex with Antagonist (S)-SG-094
Method: single particle / : Chi G, Pike ACW, Maclean EM, Li H, Mukhopadhyay SMM, Bohstedt T, Wang D, McKinley G, Fernandez-Cid A, Duerr K

EMDB-19638:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

EMDB-19641:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

PDB-8s1p:
YlmH bound to PtRNA-50S
Method: single particle / : Paternoga H, Dimitrova-Paternoga L, Wilson DN

PDB-8s1u:
YlmH bound to stalled 50S subunits with RqcH and PtRNA
Method: single particle / : Paternoga H, Wilson DN

PDB-8tym:
Cryo-EM of the GDP-bound human dynamin (full-length) polymer assembled on the membrane in the super constricted state
Method: helical / : Jimah JR, Canagarajah BJ, Hinshaw JE

PDB-8tyn:
Cryo-EM of the GDP-bound human dynamin polymer assembled on the membrane in the super constricted state (tetramer model)
Method: helical / : Jimah JR, Canagarajah BJ, Hinshaw JE

EMDB-50356:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50357:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50359:
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50360:
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Method: subtomogram averaging / : Bardy P, Blaza JN, Jenkins HT, Nicholas TR, Konig HC, Alim NTB, Hart SJ, Turkenburg JP, Fogg PCM, Beatty JT, Antson AA

EMDB-50361:
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Method: subtomogram averaging / : Bardy P, Traore DAK, Blaza JN, Jenkins HT, Nicholas TR, Hart SJ, Turkenburg JP, Fogg PCM, Antson AA

EMDB-36429:
Cryo-EM structure of dengue virus serotype 3 strain EHIE46200Y19 in complex with human antibody DENV-115 IgG at 4 deg C (subparticle LLR-LRR)
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36430:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 4 deg C (subparticle LLR-LRR)
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36431:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 37 deg C (subparticle LLR-LRR)
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36432:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 4 deg C (subparticle LLR-LRR)
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36433:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 37 deg C (subparticle LLR-LRR)
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36434:
Cryo-EM structure of the small tail club shape particle of dengue virus serotype 3 strain CH53489 in complex with human antibody DENV-290 Fab at 37 deg C
Method: helical / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36435:
Cryo-EM structure of the big tail club shape particle of dengue virus serotype 3 strain CH53489 in complex with human antibody DENV-290 Fab at 37 deg C
Method: helical / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36436:
Cryo-EM structure of dengue virus serotype 3 strain EHIE46200Y19 in complex with human antibody DENV-115 IgG at 4 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36437:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 4 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36438:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-115 Fab at 37 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36439:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 4 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36440:
Cryo-EM structure of dengue virus serotype 3 strain 863DK in complex with human antibody DENV-290 Fab at 37 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-36441:
Cryo-EM structure of dengue virus serotype 3 strain CH53489 spherical particle in complex with human antibody DENV-290 Fab at 37 deg C
Method: single particle / : Fibriansah G, Ng TS, Tan AWK, Shi J, Lok SM

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-42434:
Cryo-EM of (L, L)-2NapFF micelle
Method: helical / : Sonani RR, Adams DJ, Egelman EH

EMDB-42436:
Cryo-EM of (L,D)-2NapFF micelle
Method: helical / : Sonani RR, Adams DJ, Egelman EH

EMDB-39546:
SARS-CoV-2 Delta Spike in complex with JL-8C
Method: single particle / : Nguyen VHT, Chen X

EMDB-39547:
SARS-CoV-2 Delta Spike in complex with JM-1A
Method: single particle / : Nguyen VHT, Chen X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more