[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 45 items for (author: ilangovan & i)

EMDB-50098:
Initial 3D Map of relaxosome complex with oriT DNA ds-27_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50099:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_+8ds+9_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50102:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-8ds-7_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50103:
Initial 3D Map of relaxosome complex with oriT DNA ss-27_-13ds-12_+143
Method: single particle / : Williams SM, Waksman G

EMDB-50104:
Initial 3D Map of relaxosome complex with oriT DNA ds-2_+113deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50105:
Initial 3D Map of relaxosome complex with oriT DNA ds-67_+113(poly-dT15-17_-3)deltaTraM
Method: single particle / : Williams SM, Waksman G

EMDB-50117:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

EMDB-50118:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode. ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50119:
CryoEM map of the F plasmid relaxosome with truncated TraI1-863 in its TE mode. ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Method: single particle / : Williams SM, Waksman G

EMDB-50120:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50121:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI in its TE mode. ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50122:
CryoEM map of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI in its TE mode. ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50131:
CryoEM map of the F plasmid relaxosome in its pre-initiation state. ds-27_+143-R Global Map 4.31 A.
Method: single particle / : Williams SM, Waksman G

EMDB-50132:
CryoEM map of the F plasmid relaxosome with truncated TraI1-863 in its TE mode. ss-27_+8ds+9_+143-R_deltaAH+CTD Global 3.93 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-50133:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode, without the accessory protein TraM. ss-27_+8ds+9_+143-R_deltaTraM Global 3.11 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-53548:
CryoEM map of the F plasmid relaxosome with TraI in its TE mode. ss-27_+8ds+9_+143-R Global 3.77 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f0x:
CryoEM structure of the F plasmid relaxosome in its pre-initiation state, derived from the ds-27_+143-R Locally-refined Map 3.76 A
Method: single particle / : Williams SM, Waksman G

PDB-9f0y:
CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, derived from the ss-27_+8ds+9_+143-R Locally-refined 3.45 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f0z:
CryoEM structure of the F plasmid relaxosome with truncated TraI1-863 in its TE mode, derived from the ss-27_+8ds+9_+143-R_deltaAH+CTD Locally-refined 3.42 A Map
Method: single particle / : Williams SM, Waksman G

PDB-9f10:
CryoEM structure of the F plasmid relaxosome with TraI in its TE mode, without accessory protein TraM. Derived from the ss-27_+8ds+9_+143-R_deltaTraM Locally-refined 2.94 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f11:
CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_+3ds+4_+143 and TraI its TE mode, derived from ss-27_+3ds+4_+143-R Locally-refined 3.68 A Map.
Method: single particle / : Williams SM, Waksman G

PDB-9f12:
CryoEM structure of the F plasmid relaxosome with oriT DNA ss-27_-3ds-2_+143 and TraI its TE mode, derived from ss-27_-3ds-2_+143-R Locally-refined 3.42 A Map.
Method: single particle / : Williams SM, Waksman G

EMDB-16229:
Cryo-EM structure of the bacterial replication origin opening basal unwinding system
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

PDB-8btg:
Cryo-EM structure of the bacterial replication origin opening basal unwinding system
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

EMDB-16230:
Cryo-EM structure of the DnaA domain III lattice of the BUS complex
Method: single particle / : Pelliciari S, Bodet Lefevre S, Murray H, Ilangovan A

EMDB-16231:
Cryo-EM map of the region around the dsDNA of the BUS complex
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

EMDB-16256:
Cryo-EM structure of the BUS complex - domain IV lattice
Method: single particle / : Pelliciari S, Bodet-Lefevre S, Murray H, Ilangovan A

EMDB-16914:
Cryo-EM structure of the DnaD-NTD tetramer
Method: single particle / : Winterhalter C, Pelliciari S, Cronin N, Costa TRD, Murray H, Ilangovan A

PDB-8ojj:
Cryo-EM structure of the DnaD-NTD tetramer
Method: single particle / : Winterhalter C, Pelliciari S, Cronin N, Costa TRD, Murray H, Ilangovan A

EMDB-13663:
CryoEM structure of DnaD dimer from Bacillus subtilis
Method: single particle / : Winterhalter C, Pelliciari S, Cronin N, Costa TRD, Ilangovan I, Murray H

EMDB-12963:
Structure of the outer-membrane core complex (outer ring) from a conjugative type IV secretion system
Method: single particle / : Amin H, Ilangovan A, Costa TRD

PDB-7oko:
Structure of the outer-membrane core complex (outer ring) from a conjugative type IV secretion system
Method: single particle / : Amin H, Ilangovan A, Costa TRD

EMDB-12962:
Structure of the outer-membrane core complex (inner ring) from a conjugative type IV secretion system
Method: single particle / : Amin H, Ilangovan A, Costa TRD

EMDB-13231:
Outer-membrane core complex C1 map
Method: single particle / : Amin H, Ilangovan A, Costa TRD

PDB-7okn:
Structure of the outer-membrane core complex (inner ring) from a conjugative type IV secretion system
Method: single particle / : Amin H, Ilangovan A, Costa TRD

EMDB-22881:
Cryo-EM structure of enteropathogenic Escherichia colitype III secretion system EspA filament
Method: helical / : Zheng W, Ilangovan A, Costa TRD

PDB-7khw:
Cryo-EM structure of enteropathogenic Escherichia coli type III secretion system EspA filament
Method: helical / : Zheng W, Ilangovan A, Costa TRD, Egelman EH

EMDB-3601:
Cryo EM structure of the conjugative relaxes TraI of the F/R1 plasmid system
Method: single particle / : Zanetti G, Ilangovan A, Waksman G

PDB-5n8o:
Cryo EM structure of the conjugative relaxase TraI of the F/R1 plasmid system
Method: single particle / : Ilangovan A, Zanetti G, Waksman G

PDB-5ler:
Structure of the bacterial sex F pilus (13.2 Angstrom rise)
Method: helical / : Costa TRD, Ilangovan I, Ukleja M, Redzej A, Santini JM, Smith TK, Egelman EH, Waksman G

PDB-5lfb:
Structure of the bacterial sex F pilus (12.5 Angstrom rise)
Method: helical / : Costa TRD, Ilangovan I, Ukleja M, Redzej A, Santini JM, Smith TK, Egelman EH, Waksman G

PDB-5leg:
Structure of the bacterial sex F pilus (pED208)
Method: helical / : Costa TRD, Ilangovan I, Ukleja M, Redzej A, Santini JM, Smith TK, Egelman EH, Waksman G

EMDB-4042:
Cryo-EM structure of the bacterial sex F pilus (pED208)
Method: helical / : Costa TRD, Ilangovan I

EMDB-4044:
Cryo-EM structure of the bacterial sex F pilus (13.2 Angstrom rise)
Method: helical / : Costa TRD, Ilangovan I

EMDB-4046:
Cryo-EM structure of the bacterial sex F pilus (12.5 Angstrom rise)
Method: helical / : Costa TRD, Ilangovan I

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more